Detail information of GWHGAAZE022264


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280085.13.01831E-63PREDICTED: ER membrane protein complex subunit 6 [Vitis vinifera]
trEMBLtr|A0A068U343|A0A068U343_COFCA1E-62Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP02985.1}
TAIR10AT5G49540.16E-43Rab5-interacting family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6941397269419024-
GWHAAZE00000006mRNA6941397269419024-
GWHAAZE00000006mRNA6941397269417113-
GWHAAZE00000006exon6941690269417113-
GWHAAZE00000006exon6941894369419024-
GWHAAZE00000006exon6941690269417040-
GWHAAZE00000006exon6941596369416158-
GWHAAZE00000006exon6941430269414321-
GWHAAZE00000006exon6941397269414187-
GWHAAZE00000006CDS6941894369419024-
GWHAAZE00000006CDS6941690269417040-
GWHAAZE00000006CDS6941596369416158-
GWHAAZE00000006CDS6941430269414321-
GWHAAZE00000006CDS6941415769414187-
GWHAAZE00000006three_prime_UTR6941397269414156-
GWHAAZE00000006five_prime_UTR6941700969417113-
GWHAAZE00000006CDS6941690269417008-
GWHAAZE00000006CDS6941596369416158-
GWHAAZE00000006CDS6941430269414321-
GWHAAZE00000006CDS6941415769414187-
GWHAAZE00000006three_prime_UTR6941397269414156-
Transcript Sequence

Network for GWHGAAZE022264

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0244


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07019.13Rab5ip701499.00E-19
PF07019.13Rab5ip321114.10E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf92.600
SRR3591706second leaf50.336
SRR3591707mature leaf46.097
SRR3591708Shoot apex89.443
SRR3591709Stem71.937
SRR3591710White floral bud89.023
SRR3591711White flower112.340
SRR3591712Green floral bud123.753
SRR3591713Yellow flower125.744
SRP173429 SRR8316895Juvenile bud stage 67.089
SRR8316896Juvenile bud stage 99.866
SRR8316897Juvenile bud stage 40.947
SRR8316894Third green stage 34.677
SRR8316900Third green stage 116.292
SRR8316901Third green stage 127.088
SRR8316898Complete white stage 55.508
SRR8316899Complete white stage 134.621
SRR8316903Complete white stage 75.172
SRR8316902Silver flowering stage55.338
SRR8316904Silver flowering stage61.692
SRR8316905Silver flowering stage31.935
SRR8316906Gold flowering stage 106.791
SRR8316907Gold flowering stage 102.146
SRR8316908Gold flowering stage 97.130
SRP132670SRR6706286Control111.411
SRR6706287Light intensity 50%114.909
SRR6706288Light intensity 20%129.850
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1148.262
CNS0095593Slightly white alabastrum(diploid) 2149.504
CNS0095594Slightly white alabastrum(diploid) 3141.351
CNS0095595Whole white alabastrum(diploid) 2117.805
CNS0095596Whole white alabastrum(diploid) 3116.856
CNS0095597Whole white alabastrum(diploid) 4105.126
CNS0095598Silvery flower (diploied) 1109.510
CNS0095599Silvery flower (diploied) 295.393
CNS0095600Silvery flower (diploied) 3107.939
CNS0095601Golden flower (diploid) 199.056
CNS0095602Golden flower (diploid) 2103.219
CNS0095603Golden flower (diploid) 3102.709
CNS0095604Slightly white alabastrum(tetraploid) 1115.345
CNS0095605Slightly white alabastrum(tetraploid) 2122.154
CNS0095606Slightly white alabastrum(tetraploid) 3112.690
CNS0095607Whole white alabastrum(tetraploid) 188.415
CNS0095608Whole white alabastrum(tetraploid) 287.976
CNS0095609Whole white alabastrum(tetraploid) 3110.619
CNS0095610Silvery flower (tetraploid) 1112.901
CNS0095611Silvery flower (tetraploid) 291.005
CNS0095612Silvery flower (tetraploid) 373.813
CNS0095613Golden flower (tetraploid) 1117.118
CNS0095614Golden flower (tetraploid) 2101.203
CNS0095615Golden flower (tetraploid) 390.926
CRA001975CRR073297Stem 128.537
CRR073298Stem 230.007
CRR073299Stem 324.226
CRR073300Leaf 130.348
CRR073301Leaf 228.661
CRR073302Leaf 331.634
CRR073303Juvenile bud 129.194
CRR073304Juvenile bud 234.651
CRR073305Juvenile bud 323.982
CRR073306Third green 118.797
CRR073307Third green 220.001
CRR073308Third green 319.425
CRR073309Second white 118.095
CRR073310Second white 223.847
CRR073311Second white 317.509
CRR073312Silver flowering 110.132
CRR073313Silver flowering 214.358
CRR073314Silver flowering 311.101
CRR073315Gold flowering 113.636
CRR073316Gold flowering 213.253
CRR073317Gold flowering 312.880
CRR073318Tawny withering 133.826
CRR073319Tawny withering 230.653
CRR073320Tawny withering 341.575