Gene detail

Detail information of GWHGAAZE022271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAT92093.1	7.8458E-125	GA 2-oxidase 1 [Nerium oleander]
COG	YP_005435847.1	7E-25	2OG-Fe(II) oxygenase family oxidoreductase
Swissprot	tr\|Q9XHM5\|G2OX2_PEA	1E-106	Gibberellin 2-beta-dioxygenase 2
trEMBL	tr\|Q53B82\|Q53B82_NEROL	3E-125	GA 2-oxidase 1 {ECO:0000313\|EMBL:AAT92093.1}
TAIR10	AT1G47990.1	1E-79	gibberellin 2-oxidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69541459	69549190	+
GWHAAZE00000006	mRNA	69541459	69549190	+
GWHAAZE00000006	exon	69541459	69541734	+
GWHAAZE00000006	exon	69544559	69544599	+
GWHAAZE00000006	exon	69547826	69548189	+
GWHAAZE00000006	exon	69548693	69549190	+
GWHAAZE00000006	CDS	69541459	69541734	+
GWHAAZE00000006	CDS	69544559	69544599	+
GWHAAZE00000006	CDS	69547826	69548189	+
GWHAAZE00000006	CDS	69548693	69548992	+
GWHAAZE00000006	three_prime_UTR	69548993	69549190	+

Transcript Sequence
>GWHTAAZE022301 ATGGTGGAGGAAAAATATGGAGCTAAAGAATTAATTCCGACAATCGACCTAACCGGCGAGAGATCGGAGGTTTCGAAGCTCATTGTCAAGGCTTGTGAAGGGACTGGTTTCTTTAAGGTGATAAACCATGGTGTCCCTTTTGATGTTGTTGAGAAAATGGTTGATGAGAGCTGTGAGTTTTTTGCCAAACCCGAATCCGAGAAGCAGAGGGCCGGGCCACCTGACCCGTATGGTTATGGAAGCAAGACCATTGGGCGTAATGGAGATACGGGTGAGGCCTTTGCCAAGACATTCTTCAGTGGTTTTGATCATTTTTGTTCAGCTGCGAATGGTTATGTAAAAGCAATTAGGGTGCTGGCTTTTGAAATACTAGAGTTGATTGCCGAAGGATTGTGCGTTCCAGATGTATCAGTCTTCAGCAAGTTAATCAGGGATGTTGATAACGACTCCCTTTTCAGGCTTAATTACTATCCATCGCTTGATCACCACATGGACACGTCTCCTTCCTCCCTTCATAACAAAAATGACAGGATTGGATTCGGGGAACACTCTGATCCTCAAATCCTCACCATTTTGAGATCCAACGACGTCGCTGGCCTCCAAATATGTCTTCAGGACATGTGGATCCCTGTCGTTCCTGACCCCGCTGCCTTTTTTCTTAACGTCGGTGATCTTTTGCAGGTAATGACAAATGGAAGGTTTGTGAGTGTGAGACACAGAGCGATGGTGAAATCGAACGAGACCAGAATGTCTATGGCTTATTTTGCTACTCCGCCGCTACATGCTACCATTAGTCCACTCCCGCTACTGCCCGACAACCAGCCTCCGCTGTATCGACCTTTCACTTGGGCCGAGTACAAAAAAGTCACTTATTCCCTCCGACTCAGTGATACTCGCCTCGGCATTTTCAATTCAAATTCCGATGACGGAGTAGATGCTGTTTGGAAGTCAGTCGTCCAAGTGCCACCCCTTGCACAATAGAGTGCTTTTAAATTTGAACTTTGAGAGTTAATATTTGTGCATTGCACGTTATCAAAAAAATGTAAGATAATTTATTATAAGCTTCTTAATTTTATGTAGTCTATGTTAGTTTTCATTAAGGGATCTTTGCTTGTAATCCGTCATTCGGACTTTGTGTGCCTTTGTAGTAACAATGGAAGTGGTGTTAAGTTTCTTTAA

Network for GWHGAAZE022271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0159
CFinderModule0231

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	12	85	1.20E-15
PF03171.21	2OG-FeII_Oxy	149	258	9.70E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.338
	SRR3591709	Stem	0.523
	SRR3591710	White floral bud	14.693
	SRR3591711	White flower	12.982
	SRR3591712	Green floral bud	9.261
	SRR3591713	Yellow flower	0.104
SRP173429	SRR8316895	Juvenile bud stage	7.801
	SRR8316896	Juvenile bud stage	2.820
	SRR8316897	Juvenile bud stage	1.972
	SRR8316894	Third green stage	3.050
	SRR8316900	Third green stage	2.897
	SRR8316901	Third green stage	3.266
	SRR8316898	Complete white stage	0.349
	SRR8316899	Complete white stage	17.367
	SRR8316903	Complete white stage	5.950
	SRR8316902	Silver flowering stage	0.349
	SRR8316904	Silver flowering stage	0.377
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.132
SRP132670	SRR6706286	Control	2.573
	SRR6706287	Light intensity 50%	4.539
	SRR6706288	Light intensity 20%	3.509
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.331
	CNS0095593	Slightly white alabastrum(diploid) 2	16.375
	CNS0095594	Slightly white alabastrum(diploid) 3	11.180
	CNS0095595	Whole white alabastrum(diploid) 2	25.083
	CNS0095596	Whole white alabastrum(diploid) 3	0.042
	CNS0095597	Whole white alabastrum(diploid) 4	18.366
	CNS0095598	Silvery flower (diploied) 1	69.562
	CNS0095599	Silvery flower (diploied) 2	55.181
	CNS0095600	Silvery flower (diploied) 3	14.389
	CNS0095601	Golden flower (diploid) 1	63.833
	CNS0095602	Golden flower (diploid) 2	33.565
	CNS0095603	Golden flower (diploid) 3	28.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.701
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.875
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.181
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.426
	CNS0095610	Silvery flower (tetraploid) 1	2.790
	CNS0095611	Silvery flower (tetraploid) 2	10.013
	CNS0095612	Silvery flower (tetraploid) 3	8.969
	CNS0095613	Golden flower (tetraploid) 1	2.247
	CNS0095614	Golden flower (tetraploid) 2	4.697
	CNS0095615	Golden flower (tetraploid) 3	7.657
CRA001975	CRR073297	Stem 1	1.476
	CRR073298	Stem 2	0.750
	CRR073299	Stem 3	2.182
	CRR073300	Leaf 1	3.612
	CRR073301	Leaf 2	1.107
	CRR073302	Leaf 3	1.017
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	1.914
	CRR073305	Juvenile bud 3	0.223
	CRR073306	Third green 1	0.026
	CRR073307	Third green 2	0.113
	CRR073308	Third green 3	1.322
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.184
	CRR073311	Second white 3	0.020
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.044
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.080
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.607