Gene detail

Detail information of GWHGAAZE022272

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011027944.1	5.2589E-137	PREDICTED: transcription factor MYB108-like [Populus euphratica]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	1E-83	Transcription factor MYB108
trEMBL	tr\|B9HIK1\|B9HIK1_POPTR	2E-136	GmMYB12 family protein {ECO:0000313\|EMBL:EEE88736.1}
TAIR10	AT5G49620.1	2E-72	myb domain protein 78

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69568546	69570157	-
GWHAAZE00000006	mRNA	69568546	69570157	-
GWHAAZE00000006	exon	69568546	69569212	-
GWHAAZE00000006	exon	69569304	69569433	-
GWHAAZE00000006	exon	69569962	69570157	-
GWHAAZE00000006	CDS	69569962	69570157	-
GWHAAZE00000006	CDS	69569304	69569433	-
GWHAAZE00000006	CDS	69568546	69569212	-

Transcript Sequence
>GWHTAAZE022302 ATGGATGTGAAAGGCAGACCATCAGTTCATCATCGAAACTCTGATGATTTACAAAATGATCATGATCAAGAATTAGAAGAAGAACAGATGATGGACCTTAGAAGAGGACCATGGACCGTCGAAGAAGATATTACTCTCATCAACTATATTGGTCACCATGGCGAAGGCCGATGGAACTCCCTTGCTCGCTGTGCCGGTCTCAAGAGAACCGGCAAGAGCTGCAGATTAAGATGGCTAAATTATTTAAGACCTGACGTTCGACGAGGAAATATCACCCTCGAAGAACAACTCTTGATTCTCGAACTTCACTCTCGATGGGGCAATCGGTGGTCGAAAATCGCTCAGCAACTGCCCGGGAGAACCGATAATGAGATAAAAAACTACTGGAGAACGCGTGTACAAAAACACGCGAAGCAACTCAAATGCGACGTTAACAGCAAGCAATTCAAGGACACCATGCGCTATCTCTGGATGCCGAGGTTGGTCGAGAGAATTCAGGCGGCTTCCACACCCAACGTGACCACCACCCGAGCTTCCTCCTCCACCACCGCAGCAACCGCAACCACCGGTAATTACCACCTCAACAACATGGATACCGGTTCAGCCGGTCATCAAGTGCTATGGCCACAGCCGAATAATATTGGTGGCAATAACTTTGGTGGGGTCCCGCCATGCCATGTCAGCTTCACGCCTGAAAATTCAAGCACGGCGGGTTCCTCGGAGTCATTTGGGAGATCACAAGTTTCCCCGGTATCAGAATTAACTGATTGTTATTATCCGGTTAATCATAACCTCAATCAAGATTATCTTAACCCTAATCAGCTTGGCTTATCAGAGACACTAAATAGTCCCCCTGGGTACTTTAACCAAGGATTGGACATGCACGCCGCGGAGCCAAACAACACTTGGTTGGACGGTGGGGACTTATCCTACAATTTGTGGAATGTTGAGGACTATTGGTTCATGCAGCAGCAATTTAGCAACAATATTTGA

Network for GWHGAAZE022272

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	35	82	1.10E-14
PF00249.32	Myb_DNA-binding	88	131	8.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.430
	SRR3591708	Shoot apex	0.390
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	51.884
	SRR3591711	White flower	11.075
	SRR3591712	Green floral bud	3.237
	SRR3591713	Yellow flower	3.755
SRP173429	SRR8316895	Juvenile bud stage	1.101
	SRR8316896	Juvenile bud stage	1.205
	SRR8316897	Juvenile bud stage	0.741
	SRR8316894	Third green stage	0.674
	SRR8316900	Third green stage	1.563
	SRR8316901	Third green stage	1.623
	SRR8316898	Complete white stage	3.020
	SRR8316899	Complete white stage	2.623
	SRR8316903	Complete white stage	3.804
	SRR8316902	Silver flowering stage	6.231
	SRR8316904	Silver flowering stage	7.075
	SRR8316905	Silver flowering stage	5.430
	SRR8316906	Gold flowering stage	7.579
	SRR8316907	Gold flowering stage	14.816
	SRR8316908	Gold flowering stage	6.295
SRP132670	SRR6706286	Control	4.313
	SRR6706287	Light intensity 50%	3.612
	SRR6706288	Light intensity 20%	1.994
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.727
	CNS0095593	Slightly white alabastrum(diploid) 2	1.524
	CNS0095594	Slightly white alabastrum(diploid) 3	0.607
	CNS0095595	Whole white alabastrum(diploid) 2	1.426
	CNS0095596	Whole white alabastrum(diploid) 3	1.164
	CNS0095597	Whole white alabastrum(diploid) 4	1.433
	CNS0095598	Silvery flower (diploied) 1	2.529
	CNS0095599	Silvery flower (diploied) 2	2.581
	CNS0095600	Silvery flower (diploied) 3	13.493
	CNS0095601	Golden flower (diploid) 1	1.991
	CNS0095602	Golden flower (diploid) 2	7.956
	CNS0095603	Golden flower (diploid) 3	9.574
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.762
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.212
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.302
	CNS0095610	Silvery flower (tetraploid) 1	25.954
	CNS0095611	Silvery flower (tetraploid) 2	16.351
	CNS0095612	Silvery flower (tetraploid) 3	10.632
	CNS0095613	Golden flower (tetraploid) 1	18.753
	CNS0095614	Golden flower (tetraploid) 2	28.684
	CNS0095615	Golden flower (tetraploid) 3	12.960
CRA001975	CRR073297	Stem 1	3.936
	CRR073298	Stem 2	3.671
	CRR073299	Stem 3	5.692
	CRR073300	Leaf 1	3.499
	CRR073301	Leaf 2	4.961
	CRR073302	Leaf 3	3.034
	CRR073303	Juvenile bud 1	3.406
	CRR073304	Juvenile bud 2	7.448
	CRR073305	Juvenile bud 3	2.661
	CRR073306	Third green 1	8.526
	CRR073307	Third green 2	15.412
	CRR073308	Third green 3	10.006
	CRR073309	Second white 1	6.541
	CRR073310	Second white 2	5.345
	CRR073311	Second white 3	4.327
	CRR073312	Silver flowering 1	2.863
	CRR073313	Silver flowering 2	4.457
	CRR073314	Silver flowering 3	4.479
	CRR073315	Gold flowering 1	0.499
	CRR073316	Gold flowering 2	0.180
	CRR073317	Gold flowering 3	0.620
	CRR073318	Tawny withering 1	0.970
	CRR073319	Tawny withering 2	2.461
	CRR073320	Tawny withering 3	0.432