Gene detail

Detail information of GWHGAAZE022290

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010066514.1	0	PREDICTED: ATP-citrate synthase alpha chain protein 3 [Eucalyptus grandis]
COG	YP_002731479.1	2E-134	ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme)
Swissprot	tr\|Q2QZ86\|ACLA2_ORYSJ	0	ATP-citrate synthase alpha chain protein 2
trEMBL	tr\|A0A059BF05\|A0A059BF05_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW64421.1}
TAIR10	AT1G09430.1	0	ATP-citrate lyase A-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69949667	69954656	+
GWHAAZE00000006	mRNA	69949667	69954656	+
GWHAAZE00000006	exon	69949667	69949765	+
GWHAAZE00000006	exon	69951549	69951725	+
GWHAAZE00000006	exon	69951817	69951978	+
GWHAAZE00000006	exon	69952101	69952175	+
GWHAAZE00000006	exon	69952431	69952482	+
GWHAAZE00000006	exon	69952649	69952763	+
GWHAAZE00000006	exon	69952874	69952955	+
GWHAAZE00000006	exon	69953451	69953546	+
GWHAAZE00000006	exon	69953650	69953751	+
GWHAAZE00000006	exon	69953890	69954006	+
GWHAAZE00000006	exon	69954102	69954218	+
GWHAAZE00000006	exon	69954362	69954656	+
GWHAAZE00000006	CDS	69949667	69949765	+
GWHAAZE00000006	CDS	69951549	69951725	+
GWHAAZE00000006	CDS	69951817	69951978	+
GWHAAZE00000006	CDS	69952101	69952175	+
GWHAAZE00000006	CDS	69952431	69952482	+
GWHAAZE00000006	CDS	69952649	69952763	+
GWHAAZE00000006	CDS	69952874	69952955	+
GWHAAZE00000006	CDS	69953451	69953546	+
GWHAAZE00000006	CDS	69953650	69953751	+
GWHAAZE00000006	CDS	69953890	69954006	+
GWHAAZE00000006	CDS	69954102	69954218	+
GWHAAZE00000006	CDS	69954362	69954433	+
GWHAAZE00000006	three_prime_UTR	69954434	69954656	+

Transcript Sequence
>GWHTAAZE022320 ATGGCAAGGAAGAAGATCAGAGAGTACGACTCTAAGAGGCTTTTAAAGCAACACTTAAAGAGACTTGCTGGGATTCAGCTCCTTATTTGCTCTGCTCAGGTGACAGAGTCAACAGATTTTTCTGAATTAACAAACAAGGAAACATGGCTATCATCTACAAGATTGGTTGTGAAGCCTGATATGTTATTTGGAAAGCGTGGGAAAAGTGGACTTGTAGGCCTCAATTTAGACATGGCCCAAGTTGCAGCATTCGCTAAAGAGCGACTCGGTGAAGAGGTTGAGATGGGCGGTTGCAAGGCACCTATTACCACATTTATTGTTGAACCATTTGTTCCTCATGACGAAGAATATTACCTTTCGATTGTCTCTGAACGGCTTGGGTGCACAGTTAGCTTTTCAGAATGTGGAGGCATTGAAATTGAAGATAACTGGGACAAGACTATGTTTCTCCCAACTCAAATGCCTATGACAACTGAGGCATGTGCTCCATTGATTGCGACGCTTCCCTTAGAGGTTCGCGGGAAAATGGGAGACTTCATAAAGGGTGTCTTTGCTGTATTTAAGGATTTGAACTTCACATTCTTGGAGATGAATCCATTTACGCTGGTGAAGGGCGAACCATATCCATTAGATATGAGAGGCGAGTTGGATGATACTGCCACTTTCAAGAACTTTCAGAAATGGGGTGATATAGAATTTCCACTACCTTTCGGCAGAGTCCTAAGCCCCACAGAAAAGTTCATTCATTCATTGGATGATAAGACAAGTGCTTCCTTAAAATTCACTGTTTTGAACCCTAAAGGACGCATTTGGACAATGGTAGCTGGTGGTGGTGCTAGTGTTATTTATGCTGATACTGTTGGGGACTTGGGCTATGCATCAGAACTCGGGAATTATGCAGAGTACAGTGGGGCTCCAAATGAGGAGGAGGTCTTGCAGTATGCCAGAGTTGTTATTGATTGTGCTACTGCAAATCCAGATGGTCGGAAAAGAGCTCTTCTAATCGGAGGGGGCATAGCTAACTTCACTGATGTCGCTGCTACTTTTAATGGAATTATTAGAGCCCTCAGGGAGAAGGAATCCAAGCTAAAGGCAGCAAGAATGCATATCTACGTGAGAAGGGGAGGTCCAAACTATCAGACTGGTTTGGGAAAAATGCGTGCACTGGGAGAGGAACTCGGGGTTCCCCTGGAGGTTTATGGGCCAGAGGCAACAATGACCGGTATATGTAAGGAAGCAATTGAGTGCGTGATGGCAGACGCATAAAAACCCATCTTAGTTTGATGTTTTCATACAAGTTTGCTGCAGGAGTCGTATTTTGCTTTATCAAACACTTTGGTTTTCCCTCGTTTTCAGGCAGGAAGTGAAGTTTAACTTGGTCCCTGTTTTGCTATTGCCACCACGTACTCTTCATTGGAGTGAAAAAATTACCATTTGTTAATAGCATAGGATTTGGAATTGGCAACGGGGTTTTAAACAAGTTACTTCT

Network for GWHGAAZE022290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08442.11	ATP-grasp_2	6	201	3.90E-14
PF16114.6	Citrate_bind	239	415	5.80E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01648	ACLY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.805
	SRR3591706	second leaf	5.658
	SRR3591707	mature leaf	13.205
	SRR3591708	Shoot apex	8.949
	SRR3591709	Stem	56.644
	SRR3591710	White floral bud	2.739
	SRR3591711	White flower	2.199
	SRR3591712	Green floral bud	2.026
	SRR3591713	Yellow flower	1.872
SRP173429	SRR8316895	Juvenile bud stage	7.603
	SRR8316896	Juvenile bud stage	8.264
	SRR8316897	Juvenile bud stage	2.148
	SRR8316894	Third green stage	3.723
	SRR8316900	Third green stage	15.996
	SRR8316901	Third green stage	11.636
	SRR8316898	Complete white stage	6.757
	SRR8316899	Complete white stage	25.393
	SRR8316903	Complete white stage	13.167
	SRR8316902	Silver flowering stage	3.319
	SRR8316904	Silver flowering stage	4.797
	SRR8316905	Silver flowering stage	3.309
	SRR8316906	Gold flowering stage	5.561
	SRR8316907	Gold flowering stage	6.508
	SRR8316908	Gold flowering stage	2.987
SRP132670	SRR6706286	Control	19.476
	SRR6706287	Light intensity 50%	18.077
	SRR6706288	Light intensity 20%	20.378
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.496
	CNS0095593	Slightly white alabastrum(diploid) 2	13.443
	CNS0095594	Slightly white alabastrum(diploid) 3	13.048
	CNS0095595	Whole white alabastrum(diploid) 2	13.195
	CNS0095596	Whole white alabastrum(diploid) 3	13.193
	CNS0095597	Whole white alabastrum(diploid) 4	16.219
	CNS0095598	Silvery flower (diploied) 1	40.458
	CNS0095599	Silvery flower (diploied) 2	39.590
	CNS0095600	Silvery flower (diploied) 3	31.895
	CNS0095601	Golden flower (diploid) 1	33.762
	CNS0095602	Golden flower (diploid) 2	32.749
	CNS0095603	Golden flower (diploid) 3	31.227
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.593
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.597
	CNS0095610	Silvery flower (tetraploid) 1	9.903
	CNS0095611	Silvery flower (tetraploid) 2	15.600
	CNS0095612	Silvery flower (tetraploid) 3	7.725
	CNS0095613	Golden flower (tetraploid) 1	5.440
	CNS0095614	Golden flower (tetraploid) 2	6.921
	CNS0095615	Golden flower (tetraploid) 3	8.467
CRA001975	CRR073297	Stem 1	11.172
	CRR073298	Stem 2	9.484
	CRR073299	Stem 3	8.325
	CRR073300	Leaf 1	13.598
	CRR073301	Leaf 2	11.737
	CRR073302	Leaf 3	9.344
	CRR073303	Juvenile bud 1	11.767
	CRR073304	Juvenile bud 2	7.239
	CRR073305	Juvenile bud 3	14.420
	CRR073306	Third green 1	4.552
	CRR073307	Third green 2	6.169
	CRR073308	Third green 3	4.511
	CRR073309	Second white 1	1.379
	CRR073310	Second white 2	1.540
	CRR073311	Second white 3	0.320
	CRR073312	Silver flowering 1	0.322
	CRR073313	Silver flowering 2	0.306
	CRR073314	Silver flowering 3	0.283
	CRR073315	Gold flowering 1	1.699
	CRR073316	Gold flowering 2	4.443
	CRR073317	Gold flowering 3	3.095
	CRR073318	Tawny withering 1	19.252
	CRR073319	Tawny withering 2	13.256
	CRR073320	Tawny withering 3	24.425