Gene detail

Detail information of GWHGAAZE022293

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO98702.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SMX9\|SPL1_ARATH	Squamosa promoter-binding-like protein 1
trEMBL	tr\|A0A068TRT4\|A0A068TRT4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98702.1}
TAIR10	AT2G47070.1	squamosa promoter binding protein-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69964096	69969680	-
GWHAAZE00000006	mRNA	69964096	69969680	-
GWHAAZE00000006	exon	69964096	69964557	-
GWHAAZE00000006	exon	69965079	69965708	-
GWHAAZE00000006	exon	69966135	69966282	-
GWHAAZE00000006	exon	69966419	69966554	-
GWHAAZE00000006	exon	69966680	69966797	-
GWHAAZE00000006	exon	69966915	69967022	-
GWHAAZE00000006	exon	69967112	69967186	-
GWHAAZE00000006	exon	69967820	69968149	-
GWHAAZE00000006	exon	69968234	69968394	-
GWHAAZE00000006	exon	69968658	69968839	-
GWHAAZE00000006	exon	69969079	69969680	-
GWHAAZE00000006	CDS	69969079	69969680	-
GWHAAZE00000006	CDS	69968658	69968839	-
GWHAAZE00000006	CDS	69968234	69968394	-
GWHAAZE00000006	CDS	69967820	69968149	-
GWHAAZE00000006	CDS	69967112	69967186	-
GWHAAZE00000006	CDS	69966915	69967022	-
GWHAAZE00000006	CDS	69966680	69966797	-
GWHAAZE00000006	CDS	69966419	69966554	-
GWHAAZE00000006	CDS	69966135	69966282	-
GWHAAZE00000006	CDS	69965079	69965708	-
GWHAAZE00000006	CDS	69964096	69964557	-

Transcript Sequence
>GWHTAAZE022323 ATGGAGGCTACATTTGGGAGAAAGGCTCATCAGTTCTATGGTCCAGTGGTGTCAGATTTGAAGGCAGTTGGTAAGAGGAGTATAGAATGGGACTTGAATGGTTGGACCTGGGATGGTGATCTGTTTACAGCGTCTCCATTGAATTCGGTGCCATCAGATATGAGGAGTAGGCAGTTTTTACCTGTAAGTTCTGATACACCAGCCAACACCGTCGTGTCTAACAGTTCTTCGTCTTGTTCGGATGAGGTCGTTATAGTAAATGACAAAGGAAAGAGGGAATTGGAGAAACGGAGGAGGGTTATCGTATCTGAACATGAAGAAGAAATGAATGGCGCAGCCGGGTCCCTAAACTTGAAGCTTGGTGGGCAAGTGTACCCGATAACAGAAGGGGAGATGGAACAATTAGAGGGGAAGAGTGGGAAGAAAAGCAAGGTTGCTGGGGCTACATTGAGCCGGACAGTTTGTCAGGTGGATGATTGTCTAGCCGATTTGAGCACTGCGAAAGATTATCACAGAAGACATAAGGTTTGCGAGTTGCATTCAAAGGCTACTAGGGCATTGGTAGGAAAAGAGATGCAAAGGTTTTGTCAGCAGTGCAGTAGGTTTCACGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTTTGGCAGGACATAATAGACGGAGAAGGAAGACACATCCTGAAAATGCAGTTAATGGAGTTCCTGTAGTTGATGAGCGTAGTAGTAGTTATTTATTAATTAGTTTGCTGAGGATACTTTCCAACATACACTCTAGTAGCTCAGATGAAACGAAGGATCAGGTTCTACTGTCTCATCTATTGAAAAACCTTGGGAGTCTTACTGGTACAATTAACGATAAAAACTTATCTAGGTTATTATCCGGACGCCAAGATTTGCAGGATGCTGGGACATCTGTCGGAACCCTAGAAAAGGATTCTCGTAGGCCTAATGGACAATCTGTGGCTGTACCTCCATCGGCTTCACAATCCGCTATCCCGTTTTCTGCAAATAATGGCATTCTGGCGCAAACAAATGCCTTGGGAAGTACAGTGGAAAGGAAGAAAATGAGTGACATTGACTTGAATAACGTGTACGATGATTCTCAAGACTGCACAGAAAATCTGGAGAGTTCAGACACCCATATAGGGACTGGGTCTCTATGGCCGCGCCAAGACTCTAACAAGTCAAGCCCACCTCAAACAAGTGGGAACTCTGGTTCTTTGTCTACTCTGTCGCCGTCTAGTTCCAGTGGAGAGGCTCAGAGTCGTACAGATCGGATTGTTTTCAAGCTCTTTGGAAAAGACCCCGGTGATTTTCCCCTCGGCCTTCGAAAACAGATCATTGACTGGCTATCACACAGTCCTACAGACATAGAAAGCTACATCAGACCTGGCTGTATAATACTAACAATATATCTTCGAATGGAAAAATCTAAATGGAAGGAGCTATACGGTGATCTGAGGTGCAGTTTGAGGAGGCTTATGGATGGATCCAGTGATTCTTTCTGGAAAACAGGGTGGATCTATGCAAGGGTGCGGAACCGCGTAGCTTTTGCATATAATGGTCAGGTTGTTTTAGACACATCACTTAAAAGTGATCAAAGTTGCAGGATCTTGAGCATCAAACCAATTGCTGTTTCTATTTCAGAGGGAGCTCAATTTTTGGTTAAAGGGGTCAACCTTTCTCAGTCCACCACTAGGTTACTCTGTGCATTGGAAGGGAAGTATCTGTTCCAGCAAAGTTGTTTGGATATGGAGGGAGCAGGGTCATTAGTCGAGCATGAGGAGGTCCAGTCCCTTAGCTTCCCTTGCTGTACACCAAATGTTACTGGGAGAGGATTCATTGAGGTGGAGGATTACGGTCTCAGCAGCAGCTTCTTTCCATTTATAGTTGCAGAGAATGATGTTTGTTCTGAAATTTGTACACTAGAGTGCATTTTAGAGGTGGCTGAAACTGCCGATAACATACTAGAAAAAACCAAAATAACAGAAGCCAAAAACCAAGCTTTGGACTTTATACACGAGGTCGGTTGGCTTCTTCACAGAAATCACCTTAAAGTCAAATTGGGTTCAACGAATACCAACTTGGATATGTTCCCATTCAAACGGTTCAAGTGGCTCATTGAATTTTCCATAGAGCATGATTGGTGTGCTGTAGTTAAGAAACTCTTGGACATTTCATTCGCTGGTGTTGTAGATGCTGGGGACCACCCTTCTGTTGAACTTGCCTTGTGGGAGATTGGGCCCCTCCACAGAGCTGTGCGAAGAAGCTGCAGGCCCATGGTAGAATTTCTGTTGGGTTACTGCCCTGAAAAATCTTTAGATAAATCTGGATCTGAAAAGGAACATTTTGGCGAGAGTCGTATGTTGTTTAGACCGGACGCTATTGGTCCTGGTGGCTTGACTCCTCTTCATATAGCAGCCAGCAGAGACGGCTCGGAGAACGTGTTGGACGCACTAATGGATGATCCTGGACTGGTGGGAATAAAAGCATGGAGAAGTGCTCGTGACAGCACCGGATTAACGCCCAACGACTATGCATGCACGCGGGACCACTTCTCGTACATCCACCTCGTCCAAAAGAAAATTAACAAGAAATCAGCAGGTGGGCATGTGGTTCTGGACATCCCTCCCACCCTTCTCGACTCCAACATTAAGCAGAAACTGGCCGATGCCCATAAATCATCAGCCGAAGTTGCCACATTCCAAACCGAGAAAACAATATCAAAGCCTATTCAGAGGCAGTGCAACAGATGTGAACAGAAATTGGCTTACAGCGGTTCCAGAACATCACTTGCATTCTACAGGCCTGCAATGCTCTCGATGGTGGCAATTGCTGCTGTGTGTGTATGCGTGGCTCTACTCTTCAAGAGCTCCCCTGAGGTTCTTTACGTGTTTGAGCCCTTCACGTGGGAACGACTAGAGTATGGATCGAGCTAA

Network for GWHGAAZE022293

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	155	228	2.70E-28

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.647
	SRR3591706	second leaf	53.072
	SRR3591707	mature leaf	47.556
	SRR3591708	Shoot apex	39.471
	SRR3591709	Stem	37.481
	SRR3591710	White floral bud	17.863
	SRR3591711	White flower	16.105
	SRR3591712	Green floral bud	25.464
	SRR3591713	Yellow flower	12.870
SRP173429	SRR8316895	Juvenile bud stage	13.880
	SRR8316896	Juvenile bud stage	17.216
	SRR8316897	Juvenile bud stage	10.990
	SRR8316894	Third green stage	9.195
	SRR8316900	Third green stage	21.572
	SRR8316901	Third green stage	22.511
	SRR8316898	Complete white stage	4.881
	SRR8316899	Complete white stage	28.659
	SRR8316903	Complete white stage	10.620
	SRR8316902	Silver flowering stage	3.924
	SRR8316904	Silver flowering stage	7.494
	SRR8316905	Silver flowering stage	3.397
	SRR8316906	Gold flowering stage	11.160
	SRR8316907	Gold flowering stage	9.080
	SRR8316908	Gold flowering stage	14.438
SRP132670	SRR6706286	Control	20.594
	SRR6706287	Light intensity 50%	23.161
	SRR6706288	Light intensity 20%	24.447
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.139
	CNS0095593	Slightly white alabastrum(diploid) 2	17.412
	CNS0095594	Slightly white alabastrum(diploid) 3	12.036
	CNS0095595	Whole white alabastrum(diploid) 2	13.394
	CNS0095596	Whole white alabastrum(diploid) 3	10.455
	CNS0095597	Whole white alabastrum(diploid) 4	11.782
	CNS0095598	Silvery flower (diploied) 1	16.618
	CNS0095599	Silvery flower (diploied) 2	11.174
	CNS0095600	Silvery flower (diploied) 3	12.876
	CNS0095601	Golden flower (diploid) 1	8.086
	CNS0095602	Golden flower (diploid) 2	12.684
	CNS0095603	Golden flower (diploid) 3	13.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.300
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.648
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.423
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.099
	CNS0095610	Silvery flower (tetraploid) 1	22.953
	CNS0095611	Silvery flower (tetraploid) 2	17.445
	CNS0095612	Silvery flower (tetraploid) 3	16.649
	CNS0095613	Golden flower (tetraploid) 1	12.940
	CNS0095614	Golden flower (tetraploid) 2	20.681
	CNS0095615	Golden flower (tetraploid) 3	16.613
CRA001975	CRR073297	Stem 1	29.889
	CRR073298	Stem 2	26.218
	CRR073299	Stem 3	18.694
	CRR073300	Leaf 1	30.735
	CRR073301	Leaf 2	31.577
	CRR073302	Leaf 3	20.498
	CRR073303	Juvenile bud 1	21.809
	CRR073304	Juvenile bud 2	13.653
	CRR073305	Juvenile bud 3	29.389
	CRR073306	Third green 1	6.120
	CRR073307	Third green 2	5.235
	CRR073308	Third green 3	7.279
	CRR073309	Second white 1	5.018
	CRR073310	Second white 2	4.173
	CRR073311	Second white 3	3.611
	CRR073312	Silver flowering 1	6.294
	CRR073313	Silver flowering 2	5.277
	CRR073314	Silver flowering 3	5.155
	CRR073315	Gold flowering 1	16.773
	CRR073316	Gold flowering 2	28.285
	CRR073317	Gold flowering 3	18.203
	CRR073318	Tawny withering 1	26.248
	CRR073319	Tawny withering 2	28.444
	CRR073320	Tawny withering 3	24.866