Detail information of GWHGAAZE022300


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004239892.12.19892E-84PREDICTED: rRNA-processing protein fcf2 [Solanum lycopersicum]
trEMBLtr|K4C202|K4C202_SOLLC8E-85Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc05g053220.2.1}
TAIR10AT5G30495.23E-48Fcf2 pre-rRNA processing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7007363370076322-
GWHAAZE00000006mRNA7007363370076322-
GWHAAZE00000006exon7007609370076322-
GWHAAZE00000006exon7007592570075985-
GWHAAZE00000006exon7007485970074974-
GWHAAZE00000006exon7007363370074085-
GWHAAZE00000006CDS7007609370076322-
GWHAAZE00000006CDS7007592570075985-
GWHAAZE00000006CDS7007485970074974-
GWHAAZE00000006CDS7007397770074085-
GWHAAZE00000006three_prime_UTR7007363370073976-
Transcript Sequence

Network for GWHGAAZE022300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0244


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08698.12Fcf270976.20E-08
PF08698.12Fcf2961394.70E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.100
SRR3591706second leaf33.416
SRR3591707mature leaf31.893
SRR3591708Shoot apex47.924
SRR3591709Stem42.152
SRR3591710White floral bud36.630
SRR3591711White flower50.503
SRR3591712Green floral bud46.066
SRR3591713Yellow flower49.238
SRP173429 SRR8316895Juvenile bud stage 33.694
SRR8316896Juvenile bud stage 48.363
SRR8316897Juvenile bud stage 20.888
SRR8316894Third green stage 15.370
SRR8316900Third green stage 53.996
SRR8316901Third green stage 60.238
SRR8316898Complete white stage 22.477
SRR8316899Complete white stage 69.815
SRR8316903Complete white stage 30.486
SRR8316902Silver flowering stage24.808
SRR8316904Silver flowering stage24.286
SRR8316905Silver flowering stage14.386
SRR8316906Gold flowering stage 45.359
SRR8316907Gold flowering stage 53.638
SRR8316908Gold flowering stage 46.696
SRP132670SRR6706286Control52.628
SRR6706287Light intensity 50%54.644
SRR6706288Light intensity 20%56.054
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.184
CNS0095593Slightly white alabastrum(diploid) 265.910
CNS0095594Slightly white alabastrum(diploid) 365.425
CNS0095595Whole white alabastrum(diploid) 254.543
CNS0095596Whole white alabastrum(diploid) 350.415
CNS0095597Whole white alabastrum(diploid) 448.189
CNS0095598Silvery flower (diploied) 158.892
CNS0095599Silvery flower (diploied) 261.678
CNS0095600Silvery flower (diploied) 350.090
CNS0095601Golden flower (diploid) 149.356
CNS0095602Golden flower (diploid) 239.463
CNS0095603Golden flower (diploid) 341.534
CNS0095604Slightly white alabastrum(tetraploid) 170.541
CNS0095605Slightly white alabastrum(tetraploid) 267.334
CNS0095606Slightly white alabastrum(tetraploid) 381.531
CNS0095607Whole white alabastrum(tetraploid) 148.174
CNS0095608Whole white alabastrum(tetraploid) 247.569
CNS0095609Whole white alabastrum(tetraploid) 364.346
CNS0095610Silvery flower (tetraploid) 171.755
CNS0095611Silvery flower (tetraploid) 260.612
CNS0095612Silvery flower (tetraploid) 349.649
CNS0095613Golden flower (tetraploid) 163.631
CNS0095614Golden flower (tetraploid) 267.836
CNS0095615Golden flower (tetraploid) 338.750
CRA001975CRR073297Stem 142.787
CRR073298Stem 240.913
CRR073299Stem 341.114
CRR073300Leaf 137.420
CRR073301Leaf 237.680
CRR073302Leaf 341.610
CRR073303Juvenile bud 141.816
CRR073304Juvenile bud 231.016
CRR073305Juvenile bud 340.198
CRR073306Third green 114.726
CRR073307Third green 213.129
CRR073308Third green 312.900
CRR073309Second white 122.485
CRR073310Second white 219.758
CRR073311Second white 316.473
CRR073312Silver flowering 116.939
CRR073313Silver flowering 212.434
CRR073314Silver flowering 310.726
CRR073315Gold flowering 134.041
CRR073316Gold flowering 235.735
CRR073317Gold flowering 319.731
CRR073318Tawny withering 130.290
CRR073319Tawny withering 232.562
CRR073320Tawny withering 336.099