Gene detail

Detail information of GWHGAAZE022321

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270283.1	1.4544E-149	PREDICTED: chromatin structure-remodeling complex protein BSH [Vitis vinifera]
Swissprot	tr\|P93045\|BSH_ARATH	3E-135	Chromatin structure-remodeling complex protein BSH
trEMBL	tr\|D7T6B3\|D7T6B3_VITVI	5E-150	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26034.3}
TAIR10	AT3G17590.1	3E-107	transcription regulatory protein SNF5, putative (BSH)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70436508	70440167	-
GWHAAZE00000006	mRNA	70436508	70440167	-
GWHAAZE00000006	exon	70440118	70440167	-
GWHAAZE00000006	exon	70439906	70439994	-
GWHAAZE00000006	exon	70439377	70439471	-
GWHAAZE00000006	exon	70438691	70438762	-
GWHAAZE00000006	exon	70438523	70438570	-
GWHAAZE00000006	exon	70438319	70438402	-
GWHAAZE00000006	exon	70437325	70437363	-
GWHAAZE00000006	exon	70437144	70437226	-
GWHAAZE00000006	exon	70436951	70437013	-
GWHAAZE00000006	exon	70436508	70436607	-
GWHAAZE00000006	CDS	70440118	70440167	-
GWHAAZE00000006	CDS	70439906	70439994	-
GWHAAZE00000006	CDS	70439377	70439471	-
GWHAAZE00000006	CDS	70438691	70438762	-
GWHAAZE00000006	CDS	70438523	70438570	-
GWHAAZE00000006	CDS	70438319	70438402	-
GWHAAZE00000006	CDS	70437325	70437363	-
GWHAAZE00000006	CDS	70437144	70437226	-
GWHAAZE00000006	CDS	70436951	70437013	-
GWHAAZE00000006	CDS	70436508	70436607	-

Transcript Sequence
>GWHTAAZE022351 ATGAAGCCACTTCCATGGAGTTCTTCCAAGATTCCAGTCAAGTTCAGAATTCCAACGGCCGACAATCTAATTCCAATTCGTCTCGACATAGAAATCGACGGTCAGAGATTCAGAGATGCTTTTACTTGGAACCCTTCTGACCCTGATTCGGAGGTGGTGGTTTTTGCGAAAAGAACAGTTAAGGACTTAAAGCTTCCTCCGGGATTTGTTACACAGATTGCTCAATCCATTCAAACACAGCTGGCAGAATTTCGATCCTTTGAAGGGCAAGACATGTACACTGGCGAGAAAATTGTTCCGATCAAGATTGATCTTCGAGTGAATCATACTCTAATAAGGGACCACTTTCTATGGGACTTGAATAATTTTGAGAGCGACCCTGAAGAATTCGCGAGAGCCTTCTGCAGAGACATGGGCCTCGAAGACCCTGAAGTTGGACCTGCAATTGCCTTTTCAATTAGGGAGCAACTTTATGAGATTGCAATGCAAGGTGTAGCGTCAGTAAGAGAAACCAGGATAAACAAGAAGGGTCGCAGAGGGGCTGAATATATCCCACCAAGTAAGGCTGGTGGAACAGCTGTGGACTTGGTGAAGTTATTTGGTAGCAAATCAAGTGTCATTAGGAAAAGAAAGGAGTGGGATGTATACGAACCCATTGTAGATATTATGTCGAGTGAGGAAGTGGATATCCTTGAAGCAACAGAAGAGAGACACGCTCGATGA

Network for GWHGAAZE022321

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04855.13	SNF5	21	87	9.10E-18
PF04855.13	SNF5	100	240	2.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11648	SMARCB1, SNF5, INI1	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006338	biological_process	chromatin remodeling
GO:0000228	cellular_component	nuclear chromosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.508
	SRR3591706	second leaf	48.527
	SRR3591707	mature leaf	40.609
	SRR3591708	Shoot apex	58.941
	SRR3591709	Stem	50.265
	SRR3591710	White floral bud	36.344
	SRR3591711	White flower	42.805
	SRR3591712	Green floral bud	45.550
	SRR3591713	Yellow flower	27.550
SRP173429	SRR8316895	Juvenile bud stage	27.853
	SRR8316896	Juvenile bud stage	38.309
	SRR8316897	Juvenile bud stage	19.242
	SRR8316894	Third green stage	15.029
	SRR8316900	Third green stage	40.210
	SRR8316901	Third green stage	42.091
	SRR8316898	Complete white stage	17.331
	SRR8316899	Complete white stage	59.869
	SRR8316903	Complete white stage	27.673
	SRR8316902	Silver flowering stage	16.415
	SRR8316904	Silver flowering stage	21.241
	SRR8316905	Silver flowering stage	11.485
	SRR8316906	Gold flowering stage	33.192
	SRR8316907	Gold flowering stage	38.272
	SRR8316908	Gold flowering stage	32.797
SRP132670	SRR6706286	Control	44.653
	SRR6706287	Light intensity 50%	62.215
	SRR6706288	Light intensity 20%	61.305
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.488
	CNS0095593	Slightly white alabastrum(diploid) 2	38.278
	CNS0095594	Slightly white alabastrum(diploid) 3	34.881
	CNS0095595	Whole white alabastrum(diploid) 2	30.876
	CNS0095596	Whole white alabastrum(diploid) 3	33.173
	CNS0095597	Whole white alabastrum(diploid) 4	32.603
	CNS0095598	Silvery flower (diploied) 1	41.246
	CNS0095599	Silvery flower (diploied) 2	31.928
	CNS0095600	Silvery flower (diploied) 3	33.940
	CNS0095601	Golden flower (diploid) 1	41.469
	CNS0095602	Golden flower (diploid) 2	35.736
	CNS0095603	Golden flower (diploid) 3	30.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.869
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.197
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.343
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.464
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.730
	CNS0095610	Silvery flower (tetraploid) 1	39.812
	CNS0095611	Silvery flower (tetraploid) 2	35.972
	CNS0095612	Silvery flower (tetraploid) 3	34.107
	CNS0095613	Golden flower (tetraploid) 1	33.499
	CNS0095614	Golden flower (tetraploid) 2	38.128
	CNS0095615	Golden flower (tetraploid) 3	21.485
CRA001975	CRR073297	Stem 1	43.677
	CRR073298	Stem 2	42.550
	CRR073299	Stem 3	37.328
	CRR073300	Leaf 1	39.304
	CRR073301	Leaf 2	44.423
	CRR073302	Leaf 3	35.932
	CRR073303	Juvenile bud 1	38.303
	CRR073304	Juvenile bud 2	32.352
	CRR073305	Juvenile bud 3	26.319
	CRR073306	Third green 1	10.369
	CRR073307	Third green 2	16.193
	CRR073308	Third green 3	16.904
	CRR073309	Second white 1	11.467
	CRR073310	Second white 2	17.516
	CRR073311	Second white 3	11.085
	CRR073312	Silver flowering 1	9.001
	CRR073313	Silver flowering 2	7.178
	CRR073314	Silver flowering 3	12.510
	CRR073315	Gold flowering 1	24.788
	CRR073316	Gold flowering 2	34.558
	CRR073317	Gold flowering 3	15.325
	CRR073318	Tawny withering 1	32.476
	CRR073319	Tawny withering 2	38.672
	CRR073320	Tawny withering 3	32.386