Gene detail

Detail information of GWHGAAZE022328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655958.1	0	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Vitis vinifera]
COG	YP_003887875.1	8E-43	WD40 repeat-containing protein
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|F6HVX7\|F6HVX7_VITVI	0	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256\|HAMAP-Rule:MF_03022}
TAIR10	AT5G23430.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70564656	70580752	+
GWHAAZE00000006	mRNA	70564656	70580752	+
GWHAAZE00000006	exon	70564656	70564715	+
GWHAAZE00000006	exon	70565201	70565290	+
GWHAAZE00000006	exon	70565496	70565613	+
GWHAAZE00000006	exon	70565710	70565936	+
GWHAAZE00000006	exon	70566553	70566655	+
GWHAAZE00000006	exon	70569627	70569697	+
GWHAAZE00000006	exon	70569791	70569865	+
GWHAAZE00000006	exon	70569956	70570099	+
GWHAAZE00000006	exon	70570195	70570429	+
GWHAAZE00000006	exon	70570563	70571078	+
GWHAAZE00000006	exon	70571432	70571491	+
GWHAAZE00000006	exon	70571573	70571694	+
GWHAAZE00000006	exon	70572382	70573106	+
GWHAAZE00000006	exon	70573462	70573657	+
GWHAAZE00000006	exon	70579078	70579203	+
GWHAAZE00000006	exon	70580433	70580507	+
GWHAAZE00000006	exon	70580636	70580752	+
GWHAAZE00000006	CDS	70564656	70564715	+
GWHAAZE00000006	CDS	70565201	70565290	+
GWHAAZE00000006	CDS	70565496	70565613	+
GWHAAZE00000006	CDS	70565710	70565936	+
GWHAAZE00000006	CDS	70566553	70566655	+
GWHAAZE00000006	CDS	70569627	70569697	+
GWHAAZE00000006	CDS	70569791	70569865	+
GWHAAZE00000006	CDS	70569956	70570099	+
GWHAAZE00000006	CDS	70570195	70570429	+
GWHAAZE00000006	CDS	70570563	70571078	+
GWHAAZE00000006	CDS	70571432	70571491	+
GWHAAZE00000006	CDS	70571573	70571694	+
GWHAAZE00000006	CDS	70572382	70573106	+
GWHAAZE00000006	CDS	70573462	70573657	+
GWHAAZE00000006	CDS	70579078	70579203	+
GWHAAZE00000006	CDS	70580433	70580507	+
GWHAAZE00000006	CDS	70580636	70580752	+

Transcript Sequence
>GWHTAAZE022358 ATGTGGAGATTTATCGAGATCCGGAGTATTTCAGATTGGGGCGGAGTAGTAGTATTAATGATTGGGAGGAAGTCATCGAGGGTTCTTGTCACCGGAGGAGAAGATCACAAGGTTAATTTGTGGGCTATTGGGAAGCCAAATGCCATACTGAGTTTGTCTGGTCATTCAAGTGGAATTGATTCTGTCAGCTTTGATTCTTCTGAAGTGTTGGTAGCTGCAGGAGCAGCAAGTGGTACGATCAAGCTTTGGGATTTAGAAGAGGCAAAGATTGTTCGTACCCTTACTGGTCATCGGTCTAATTGTATATCCTTGGACTTCCATCCCTTTGGGGAGTTCTTTGCATCTGGATCTTTGGACACAAATCTAAAGATATGGGATATCAGAAGGAAAGGGTGTATTCACACGTATAAGGGCCACACTCGAGGGGTCAACGCAATCAGGTTTACGCCGGATGGCCGTTGGGTTGTATCAGGTGGAGAGGACAACACTGTGAAGCTGTGGGATCTTACTGCGGGAAAGCTGTTACACGAGTTCAAGTCTCATGAAGGCCAGATTCAATGCATAGATTTTCATCCCCATGAATTTTTGCTTGCGACAGGCTCGGCTGATAAAACTGTTAAATTCTGGGACCTCGAAACTTTTGAGCTTATAGGTTCAGCTGGCCCAGAGACAACTGGAGTGCGTTGTATGACTTTCAATCCTGATGGGAGAACCCTGCTTTGTGGTTTGCATGAAAGTCTGAAGGTCTTCTCATGGGAGCCAATCAGATGTCATGATGCTGTGGACGTGGGATGGTCCAGATTGTCAGATCTTAACATTCATGAGGGGAAGCTTCTTGGCTGTTCCTACAATCAGAGTTGCGTAGGAGTATGGGTTGTAGACATATCGCGTATTGAACCTTATGCAATTGGTAATACTACTCGACTAAATGGTCACGCAGAACCCAAATCTAATTCAAGTGGGAGTATATCAGTTCTGACTGAAAACACTGGGAAGCCCAGCTTAGGTAGGGTTTCCATATCACAAAATTCAGAAGCTGTATTGAAGGAAACAAAATCTTTGGGGCGGCTTTCTGTGTCCCAGAACTCTGATCCTAGTACCAAGGAGTCAAAATCTTTTGCATCCACAGGAACTGTACCTGGTACTCCACAGAAGGTAAATGTTGGTCCTAAGACAAATCCAATTAGTTCAGCAGTTCCTACTGTAACAGCTCCCAAGAGGAATTCAGCAAAGACCCATTCAACAGCAAATACTTCAGTCCGAAAATTGTCAGATGTGGTACCTGTAGTTGTCCCAAGAAATAACGCAAGATTTGAGCAGGCGGCTGAAATAAGAAAAGAAGGAATTGGAAGAATGATGCCACTGTCCCTGCAGTCAAAGACTTCTGATTTTCGAAAGTTTTCAAGTATCCGAGAAAATTTGGAGAGCCCAAATGCTTCTGAACAGTCTGTAAGTGAAGTGTTTAAGGCCACTGAACTCAAAGGAGTTTCAGAAAGAAATGTTTTACCTTCACATAAGAGCTTGACTGTAGGATTTCCTGCTGCTGAGCGGAACCTAAAAGATGATAGGTTTACTGTTTCTGGGAAATTTCAAACGAATGTGATGACAGAGTCAATTGCCACCTCCCAGCATGAAAGCTACGAAACTCGTGTTAATAAAGCAAATAGAGACAATTGTTCTGTGGAAACTCAAAAAGGAGGAAGAACACGCTCACTTGTTGCAACCTGGGAGAAGAAAGAAAGATCTCCCTCTCACAAGATTCTGCCTTCTAGTAATCTCACCGTGGCAGGATCTGCTATCAACACTCTCCCAGCTAGTACGGTCTGTGTAAGATTGATAAGCAGAATGGGTGAGTTTTACAGCAATAGATCAAGGGAGTTTAGATTCGAATACAAAAGGTTTACGTTTGAGGTAGACAATGGAGGTTCCATGGGCATCATTACAGAAACAAATCGTCAGAGGTCATACACAATTAGAATCGACTTTGGTGGTATGTTCTGGCTTATGGAAGGGTTGTATTCGGCTGCAAGAGGCTCCGGTGAGAGTAAATTCTTTCAAAAATATCAAGCATCTTACGGATTATTCGTCATGGAAAAATATTCAAACAGGAATGGAAGCTTCATCAGATTGTTGGAATTGCAAAGGGGTATGCTATCAAATACTATTATTCTTCCGGCTGGTAACAGAGGTGAGGGTTGGAGGGGTGTGGCTGATAGATTGAAGCAGATGATGTTTTCCCCGAGTCCAGATCCCAAATATGTTCCAGTCAAGAATGCACGAGTGCAAGTTAAAAATGATAATATTAGTGGTAGAGGAGGGAATAAACAACACCGTTCATATGTTGAGGCTTTGAAATACGAAAGATCATTTAATTATCATCCTCAAGTCAAACACAATGTGGGTGATGAGGCTGTGGTGGAGTGGAGTAAAGTCGTGGTTTGTACAAGAGAATCAATTTGGGATTCATGGCATGGTATTCAAAGGGCCATGAATAAATTCTACAGAACCAGACTTGTGCTGAGACCTTTTCAGGCAGATAAAGCCCTGTTAAGAGCAATCTCCAAACTCCGTTGGGATAGAGTCTCTGCCGAAGATCCCTTGCCAATCAATATGTCTGCCGAAGAGGATATAGTGGTAGTGGATACAAAGAATGATGAGGATGACATGCTGACTAGTTTTGGTAAGGTTGAGGGTGGAAATTATGGTGTGAGGGCAAAACTGAATCAGAACAGATGCAGCCTGAGAGAGTGCTCCTTGTCTGCTGAGAAGGAAATAGTCCCTGCTAGCGAGGAGGATGTTATTGCTGATTTAATGGAACAACACGATCTATTTGCCAGCTCTATGCAGTCTCGTTTGGCCAAATTGCAGGTAGTACACAAATACTGTGAAAGGAATGATGTGAAAGGGGCCATTAGTGCGATGGAGAAGATGGCTGACCATGCTGTCACTGCAGACGTGGTTAGCTTTTTGACAGAAAAAATTGAAGTTGTCACCCTGGAAATTTGCAGTTGTCTGTTGCCGCTCCTCACTGGGCTTCTTGAAAGTGGCATGGATAGGTAA

Network for GWHGAAZE022328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	49	84	0.00016
PF00400.33	WD40	90	126	2.00E-07
PF00400.33	WD40	132	168	1.60E-11
PF00400.33	WD40	172	210	7.70E-08
PF13925.7	Katanin_con80	940	1018	1.30E-22

Protein Sequence

>GWHPAAZE022344
MWRFIEIRSISDWGGVVVLMIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISLDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHEFKSHEGQIQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSAGPETTGVRCMTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDISRIEPYAIGNTTRLNGHAEPKSNSSGSISVLTENTGKPSLGRVSISQNSEAVLKETKSLGRLSVSQNSDPSTKESKSFASTGTVPGTPQKVNVGPKTNPISSAVPTVTAPKRNSAKTHSTANTSVRKLSDVVPVVVPRNNARFEQAAEIRKEGIGRMMPLSLQSKTSDFRKFSSIRENLESPNASEQSVSEVFKATELKGVSERNVLPSHKSLTVGFPAAERNLKDDRFTVSGKFQTNVMTESIATSQHESYETRVNKANRDNCSVETQKGGRTRSLVATWEKKERSPSHKILPSSNLTVAGSAINTLPASTVCVRLISRMGEFYSNRSREFRFEYKRFTFEVDNGGSMGIITETNRQRSYTIRIDFGGMFWLMEGLYSAARGSGESKFFQKYQASYGLFVMEKYSNRNGSFIRLLELQRGMLSNTIILPAGNRGEGWRGVADRLKQMMFSPSPDPKYVPVKNARVQVKNDNISGRGGNKQHRSYVEALKYERSFNYHPQVKHNVGDEAVVEWSKVVVCTRESIWDSWHGIQRAMNKFYRTRLVLRPFQADKALLRAISKLRWDRVSAEDPLPINMSAEEDIVVVDTKNDEDDMLTSFGKVEGGNYGVRAKLNQNRCSLRECSLSAEKEIVPASEEDVIADLMEQHDLFASSMQSRLAKLQVVHKYCERNDVKGAISAMEKMADHAVTADVVSFLTEKIEVVTLEICSCLLPLLTGLLESGMDR

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051013	biological_process	microtubule severing
GO:0008352	cellular_component	katanin complex
GO:0005515	molecular_function	protein binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.031
	SRR3591706	second leaf	9.706
	SRR3591707	mature leaf	5.658
	SRR3591708	Shoot apex	14.087
	SRR3591709	Stem	15.804
	SRR3591710	White floral bud	10.577
	SRR3591711	White flower	10.876
	SRR3591712	Green floral bud	11.835
	SRR3591713	Yellow flower	8.343
SRP173429	SRR8316895	Juvenile bud stage	7.601
	SRR8316896	Juvenile bud stage	9.086
	SRR8316897	Juvenile bud stage	4.879
	SRR8316894	Third green stage	4.344
	SRR8316900	Third green stage	9.970
	SRR8316901	Third green stage	8.679
	SRR8316898	Complete white stage	2.974
	SRR8316899	Complete white stage	11.414
	SRR8316903	Complete white stage	6.209
	SRR8316902	Silver flowering stage	2.864
	SRR8316904	Silver flowering stage	5.822
	SRR8316905	Silver flowering stage	2.325
	SRR8316906	Gold flowering stage	5.882
	SRR8316907	Gold flowering stage	6.386
	SRR8316908	Gold flowering stage	6.601
SRP132670	SRR6706286	Control	5.743
	SRR6706287	Light intensity 50%	6.669
	SRR6706288	Light intensity 20%	7.635
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.116
	CNS0095593	Slightly white alabastrum(diploid) 2	4.356
	CNS0095594	Slightly white alabastrum(diploid) 3	3.622
	CNS0095595	Whole white alabastrum(diploid) 2	4.205
	CNS0095596	Whole white alabastrum(diploid) 3	3.075
	CNS0095597	Whole white alabastrum(diploid) 4	2.787
	CNS0095598	Silvery flower (diploied) 1	6.632
	CNS0095599	Silvery flower (diploied) 2	4.413
	CNS0095600	Silvery flower (diploied) 3	7.567
	CNS0095601	Golden flower (diploid) 1	3.993
	CNS0095602	Golden flower (diploid) 2	8.306
	CNS0095603	Golden flower (diploid) 3	7.380
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.817
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.147
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.502
	CNS0095610	Silvery flower (tetraploid) 1	8.359
	CNS0095611	Silvery flower (tetraploid) 2	8.899
	CNS0095612	Silvery flower (tetraploid) 3	7.934
	CNS0095613	Golden flower (tetraploid) 1	4.551
	CNS0095614	Golden flower (tetraploid) 2	7.635
	CNS0095615	Golden flower (tetraploid) 3	5.714
CRA001975	CRR073297	Stem 1	14.006
	CRR073298	Stem 2	11.693
	CRR073299	Stem 3	9.646
	CRR073300	Leaf 1	11.953
	CRR073301	Leaf 2	10.242
	CRR073302	Leaf 3	9.625
	CRR073303	Juvenile bud 1	7.783
	CRR073304	Juvenile bud 2	4.744
	CRR073305	Juvenile bud 3	9.035
	CRR073306	Third green 1	2.886
	CRR073307	Third green 2	2.600
	CRR073308	Third green 3	3.963
	CRR073309	Second white 1	2.664
	CRR073310	Second white 2	2.191
	CRR073311	Second white 3	2.317
	CRR073312	Silver flowering 1	2.703
	CRR073313	Silver flowering 2	2.483
	CRR073314	Silver flowering 3	2.288
	CRR073315	Gold flowering 1	1.654
	CRR073316	Gold flowering 2	3.938
	CRR073317	Gold flowering 3	2.230
	CRR073318	Tawny withering 1	9.747
	CRR073319	Tawny withering 2	5.838
	CRR073320	Tawny withering 3	9.912