Gene detail

Detail information of GWHGAAZE022339

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002308127.1	0	biotin carboxylase precursor family protein [Populus trichocarpa]
COG	YP_001869185.1	5E-157	acetyl-CoA carboxylase biotin carboxylase subunit
Swissprot	tr\|B9HBA8\|ACCC1_POPTR	0	Biotin carboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|G7LIV6\|G7LIV6_MEDTR	0	Biotin carboxylase {ECO:0000313\|EMBL:AHN05002.1}
TAIR10	AT5G35360.1	7E-97	acetyl Co-enzyme a carboxylase biotin carboxylase subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70726271	70735552	+
GWHAAZE00000006	mRNA	70726271	70735552	+
GWHAAZE00000006	exon	70726271	70726629	+
GWHAAZE00000006	exon	70727437	70727578	+
GWHAAZE00000006	exon	70728646	70728744	+
GWHAAZE00000006	exon	70728854	70728910	+
GWHAAZE00000006	exon	70729010	70729061	+
GWHAAZE00000006	exon	70729155	70729225	+
GWHAAZE00000006	exon	70730268	70730377	+
GWHAAZE00000006	exon	70731149	70731325	+
GWHAAZE00000006	exon	70732209	70732392	+
GWHAAZE00000006	exon	70732507	70732599	+
GWHAAZE00000006	exon	70732672	70732753	+
GWHAAZE00000006	exon	70733401	70733507	+
GWHAAZE00000006	exon	70733843	70733918	+
GWHAAZE00000006	exon	70734866	70734927	+
GWHAAZE00000006	exon	70735237	70735552	+
GWHAAZE00000006	CDS	70726271	70726629	+
GWHAAZE00000006	CDS	70727437	70727578	+
GWHAAZE00000006	CDS	70728646	70728744	+
GWHAAZE00000006	CDS	70728854	70728910	+
GWHAAZE00000006	CDS	70729010	70729061	+
GWHAAZE00000006	CDS	70729155	70729225	+
GWHAAZE00000006	CDS	70730268	70730377	+
GWHAAZE00000006	CDS	70731149	70731325	+
GWHAAZE00000006	CDS	70732209	70732392	+
GWHAAZE00000006	CDS	70732507	70732599	+
GWHAAZE00000006	CDS	70732672	70732753	+
GWHAAZE00000006	CDS	70733401	70733507	+
GWHAAZE00000006	CDS	70733843	70733918	+
GWHAAZE00000006	CDS	70734866	70734927	+
GWHAAZE00000006	CDS	70735237	70735272	+
GWHAAZE00000006	three_prime_UTR	70735273	70735552	+

Transcript Sequence
>GWHTAAZE022369 ATGACTAAATACATTTTACTTTCCAGTCCAAGAGTTTATTCATGGGAAGAGCTAGCAGTATTAGGAGTTCCCAATGCAGCTTTATGGTGGGAAGTAAGGTACACTTTCCTTGGCAAAGAGCTCAGGCTTTTCAAGTTAGTCTTAAATCTGGGAAACGTGGGGGAGCTCTCGGTGTTGTATGTCGTGCTGAAAAGATTCTTGTGGCAAACAGAGGAGAAATTGCTGTTAGGTGTGATTCGAACTGCTCATGAGATGGGTATCCCTTGCGTTGCAGTTTACTCGACGATAGATAAAGATGCACTTCATGTGAAACTGGCTGATGAGTCAGTTTGTATAGGTGAAGCCCCGAGTAATCAATCGTACTTAGTGGTGGCAAATGTGCTATCTGCTGCGATCAGCCGTGGATGTACAATGCTGCACCCTGGATATGGTTTCCTTGCTGAGAATGCAAATTTTGTTGACATGTGCAGAGAGCATAGTATCAACTTCATTGGGCCAAATCCAGGCAGCATACGTGTCATGGGTGACAAAGCAACTGCCAGGGAGGCGATGAAGAAAGCTGGTGTTCCAACTGTACCAGGAAGTGACGGGTTGTTACAGAGCACTGAAGAAGCTATCAGGCTTGCCGATGGGATTGGCTTTCCTGTGATGATCAAGTCGTGTTTTCTAGCTTCTTGGACACCATCTTGTGACGGAACTGGATTGTTATGCGACAGCTGGTGGTGGTGGGCGTGGAATCGTCTTGCTAAAGAGCCAGAAGAATTTGTGAAGCTATTACAGCAAGCTAAGAGTGAGGCAGGAGCTGCATTTGGAAATGATGGTTGCTATCTGGAAAAATATATTCAGAATCCAAGGCACATTGAGTTCCAGGTTGGATTTCTTTCGCTTAGGTTTTCATGCCAAAAGAATATGTATATGTACTTGGTTCCATTGCTTTTTGTGAAATCCTATTGCTTGACCTATTTGCAAACTGTCTATTCACCTCTAGAAACCACATGGCTTTACAGGTTCTTGCAGATAAGTTTGGTAACGTTGTTCACTTTGGAGAGCGTGACTGCAGTATTCAGAGAAGGAACCAGAAGCTGCTGGAAGAAGCACCGTCCCCGCATTGACCCCAGAGCTGCGAAAGCTATGGGTGATGCAGCTGTTGCAGCAGCAGCATCTATAGGTTACATTGGTGTTGGTACTGTTGAGTTCCTTTTGGATGAAAGAGGGTCCTTTTACTTTATGGAAATGAACACTAGGATCCAGGTAGAGCATCCTGTGACAGAAATGATATCCTCAGTTGATCTGATTGAAGAGCAAATCCGTGTAGCTATGGGAGAGAAACTCCGGTACAAGCAGGAAGATATAGTGCTTAGAGGACATTCGATTGAATGCCGTATTAATGCAGAAGATGCTTTCAAAAACTTCAGACCTGGGCCAGGGAGAATAACAGCTTACTTGCCATCTGGAGGTCCATTTGTGAGAATGGATAGCCATATCTACGCTGATTATGTGGTTCCACCTAGCTATGATTCCCTACTTGGAAAGCTTATTGTTTGGGCTCCGACAAGAGAAAGGGCAATTGAACGCATGAAAAGGGCTCTTGGTGACACTATCATTACAGGACTTCAAAATGGAAAAGTTGACACTGCTTTTATTCCAAAGCATGAGGAGGAATTAGCTGAGCCCCAGAAACTGGCACTTGTGGAGGCAGCAGCCTAGATGGACATCTTCTTTATTAATTTGAGCTCCTTTTAGTGGGTTGGTCTCATTTTGGCCACAGTTTTCAGCATGCAATGTTCTAGCTTCCATCCCTCTTCACATTTTCTCCTTCAATGTGTCAAATTTCATAAGAAGGAATAAGGCCATTTAAATTTTCACCCTCAAATGAGGTTAGTGGTAGGATATGTGGATCACAGATAATCTTGTAAGTGCTTGGATGACAGTATGGAATTAATATAATCTGTTTATGAGAAGTCAAGACCATTGGTGGATTCATAAA

Network for GWHGAAZE022339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00289.23	Biotin_carb_N	78	170	9.50E-30
PF02786.18	CPSase_L_D2	176	291	2.60E-21
PF02786.18	CPSase_L_D2	368	445	7.70E-23
PF02785.20	Biotin_carb_C	459	540	9.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01961	accC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.753
	SRR3591706	second leaf	10.443
	SRR3591707	mature leaf	2.756
	SRR3591708	Shoot apex	12.973
	SRR3591709	Stem	6.970
	SRR3591710	White floral bud	17.875
	SRR3591711	White flower	13.853
	SRR3591712	Green floral bud	19.956
	SRR3591713	Yellow flower	11.914
SRP173429	SRR8316895	Juvenile bud stage	6.385
	SRR8316896	Juvenile bud stage	9.663
	SRR8316897	Juvenile bud stage	4.831
	SRR8316894	Third green stage	3.919
	SRR8316900	Third green stage	17.013
	SRR8316901	Third green stage	14.050
	SRR8316898	Complete white stage	5.126
	SRR8316899	Complete white stage	10.417
	SRR8316903	Complete white stage	8.080
	SRR8316902	Silver flowering stage	4.314
	SRR8316904	Silver flowering stage	7.085
	SRR8316905	Silver flowering stage	2.306
	SRR8316906	Gold flowering stage	7.851
	SRR8316907	Gold flowering stage	7.737
	SRR8316908	Gold flowering stage	10.156
SRP132670	SRR6706286	Control	6.304
	SRR6706287	Light intensity 50%	7.236
	SRR6706288	Light intensity 20%	9.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.130
	CNS0095593	Slightly white alabastrum(diploid) 2	9.137
	CNS0095594	Slightly white alabastrum(diploid) 3	9.407
	CNS0095595	Whole white alabastrum(diploid) 2	9.287
	CNS0095596	Whole white alabastrum(diploid) 3	8.886
	CNS0095597	Whole white alabastrum(diploid) 4	6.556
	CNS0095598	Silvery flower (diploied) 1	5.270
	CNS0095599	Silvery flower (diploied) 2	6.451
	CNS0095600	Silvery flower (diploied) 3	10.544
	CNS0095601	Golden flower (diploid) 1	6.010
	CNS0095602	Golden flower (diploid) 2	8.551
	CNS0095603	Golden flower (diploid) 3	7.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.707
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.741
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.063
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.902
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.026
	CNS0095610	Silvery flower (tetraploid) 1	13.326
	CNS0095611	Silvery flower (tetraploid) 2	17.099
	CNS0095612	Silvery flower (tetraploid) 3	16.984
	CNS0095613	Golden flower (tetraploid) 1	6.825
	CNS0095614	Golden flower (tetraploid) 2	11.563
	CNS0095615	Golden flower (tetraploid) 3	9.109
CRA001975	CRR073297	Stem 1	11.933
	CRR073298	Stem 2	9.931
	CRR073299	Stem 3	10.021
	CRR073300	Leaf 1	14.277
	CRR073301	Leaf 2	13.769
	CRR073302	Leaf 3	13.770
	CRR073303	Juvenile bud 1	13.681
	CRR073304	Juvenile bud 2	12.581
	CRR073305	Juvenile bud 3	16.777
	CRR073306	Third green 1	7.491
	CRR073307	Third green 2	6.984
	CRR073308	Third green 3	7.822
	CRR073309	Second white 1	10.734
	CRR073310	Second white 2	5.333
	CRR073311	Second white 3	4.953
	CRR073312	Silver flowering 1	7.234
	CRR073313	Silver flowering 2	6.051
	CRR073314	Silver flowering 3	7.092
	CRR073315	Gold flowering 1	2.829
	CRR073316	Gold flowering 2	4.242
	CRR073317	Gold flowering 3	2.661
	CRR073318	Tawny withering 1	9.064
	CRR073319	Tawny withering 2	5.396
	CRR073320	Tawny withering 3	9.981