Gene detail

Detail information of GWHGAAZE022345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG21613.1	3.77296E-56	hypothetical protein F383_01989 [Gossypium arboreum]
Swissprot	tr\|Q9FTA0\|GEML4_ARATH	5E-39	GEM-like protein 4
trEMBL	tr\|A0A061E267\|A0A061E267_THECC	2E-55	GRAM domain-containing protein / ABA-responsive protein-related {ECO:0000313\|EMBL:EOX99055.1}
TAIR10	AT5G08350.1	6E-34	GRAM domain-containing protein / ABA-responsive protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70823884	70828122	+
GWHAAZE00000006	mRNA	70823884	70828122	+
GWHAAZE00000006	exon	70823884	70824013	+
GWHAAZE00000006	exon	70824116	70824196	+
GWHAAZE00000006	exon	70824385	70824659	+
GWHAAZE00000006	exon	70826105	70826204	+
GWHAAZE00000006	exon	70826478	70826647	+
GWHAAZE00000006	exon	70826806	70827133	+
GWHAAZE00000006	exon	70828088	70828122	+
GWHAAZE00000006	CDS	70823884	70824013	+
GWHAAZE00000006	CDS	70824116	70824196	+
GWHAAZE00000006	CDS	70824385	70824659	+
GWHAAZE00000006	CDS	70826105	70826204	+
GWHAAZE00000006	CDS	70826478	70826647	+
GWHAAZE00000006	CDS	70826806	70827133	+
GWHAAZE00000006	CDS	70828088	70828122	+

Transcript Sequence
>GWHTAAZE022375 ATGAAGAACTCGCTTCTAGAACATGTAATTCGAATTCCTATGAGTTCGACCATGTACCTAGCTGACAGGTCTCGGAGGGATCTTTTAATGGATCATCCTCATTCCAATGGATCTTCCAGACTGAAACAAAATAAAGCCGACTTAGCGATAAATAAGAATAACAAAAGTGCAGAAAGAGCAGACAGTCTTGCAGTCAGGATCCGAGATCATGTGAGGTTAGTACCCAAAATAACTGAAACTGTGAAGGGGAAGTTGAACTTGGGGGCTAAAATTCTTCAAGTAGGAGGGGTAGCTAAAGTGTTCAAGCAAAATTTCAGCATTAGAGAAGGGGAGAAACTGTTGAAGGCCTTTCAGTGTTATTTATCAACAACAGCTGGTCCAATAGCAGTCCTTCTGTTTATCTCCACTGACAAGATCGCTTTTCGCAGTGAAAGATCTATCAAAATCTCTTCCCCGACAGGGGAGCTCATTAGAATCCACTACAAGCAAGCACTTAATCATACAAACAAAGCGGCGACTATATGCATCATGGATTGGGGATTGCATCTGTATGATGATCCCATACAACATTATGAAGAATTTTATCCAAAGGATTCTTCTTCATTCACCATTGTAATTCATCACAGTGGAAAATTAGAGTATGCACCAGACTTGGTTTATAGCAGTAGGGAGGTTGGTTATGCTAACAAAGTAGATCCTGATAGATTGTATATTCATGAGATATTGATAATGGCTAAAGAGTTAAGAACACCTGAGTATGTTCTCCTTAATGTAGTATATCCACCTACACCTACACATAATGAAAAGGCAGTTCCAAATGAGGGTGAAGGTGGAAATGTTGATGAAAATGATGGTTCAGATAATGGAGAAAAATCAGATTTGGGCAGTATGATAGGATCAGAAGATGCAATTGTAAGTGATAATGAAGATCCAAATGTGACTGTGGTAGAAGATAGTGGTGTAAATGTAGGAGATGGTGGTGCAAATGTTGGTGAAGAAGCTATGAATCAAAATGTAGAAGATGAATGGTCTGACATGGAGAAATTTGATGATTTGAGGAGTTTGAATTCTGATGAGGAGAATGGGTTTGGAGAGTGCACTAACAGATGTTGTGCCTAA

Network for GWHGAAZE022345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0100
CFinderModule0262

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02893.21	GRAM	99	156	4.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.290
	SRR3591706	second leaf	2.527
	SRR3591707	mature leaf	1.671
	SRR3591708	Shoot apex	1.910
	SRR3591709	Stem	0.314
	SRR3591710	White floral bud	0.529
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.073
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.241
	SRR8316896	Juvenile bud stage	0.688
	SRR8316897	Juvenile bud stage	0.274
	SRR8316894	Third green stage	1.406
	SRR8316900	Third green stage	6.546
	SRR8316901	Third green stage	6.119
	SRR8316898	Complete white stage	34.111
	SRR8316899	Complete white stage	14.156
	SRR8316903	Complete white stage	79.047
	SRR8316902	Silver flowering stage	9.204
	SRR8316904	Silver flowering stage	10.669
	SRR8316905	Silver flowering stage	0.967
	SRR8316906	Gold flowering stage	0.740
	SRR8316907	Gold flowering stage	0.413
	SRR8316908	Gold flowering stage	0.312
SRP132670	SRR6706286	Control	0.499
	SRR6706287	Light intensity 50%	0.615
	SRR6706288	Light intensity 20%	0.614
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.918
	CNS0095593	Slightly white alabastrum(diploid) 2	1.639
	CNS0095594	Slightly white alabastrum(diploid) 3	1.649
	CNS0095595	Whole white alabastrum(diploid) 2	1.690
	CNS0095596	Whole white alabastrum(diploid) 3	2.417
	CNS0095597	Whole white alabastrum(diploid) 4	3.224
	CNS0095598	Silvery flower (diploied) 1	0.142
	CNS0095599	Silvery flower (diploied) 2	0.528
	CNS0095600	Silvery flower (diploied) 3	2.621
	CNS0095601	Golden flower (diploid) 1	0.180
	CNS0095602	Golden flower (diploid) 2	0.226
	CNS0095603	Golden flower (diploid) 3	0.776
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.449
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.419
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.200
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.783
	CNS0095610	Silvery flower (tetraploid) 1	0.228
	CNS0095611	Silvery flower (tetraploid) 2	0.082
	CNS0095612	Silvery flower (tetraploid) 3	0.122
	CNS0095613	Golden flower (tetraploid) 1	0.232
	CNS0095614	Golden flower (tetraploid) 2	0.181
	CNS0095615	Golden flower (tetraploid) 3	2.640
CRA001975	CRR073297	Stem 1	2.141
	CRR073298	Stem 2	1.331
	CRR073299	Stem 3	1.391
	CRR073300	Leaf 1	8.078
	CRR073301	Leaf 2	3.917
	CRR073302	Leaf 3	2.570
	CRR073303	Juvenile bud 1	4.199
	CRR073304	Juvenile bud 2	7.018
	CRR073305	Juvenile bud 3	3.611
	CRR073306	Third green 1	2.801
	CRR073307	Third green 2	7.270
	CRR073308	Third green 3	4.381
	CRR073309	Second white 1	0.147
	CRR073310	Second white 2	0.387
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.168
	CRR073316	Gold flowering 2	0.025
	CRR073317	Gold flowering 3	0.303
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000