Detail information of GWHGAAZE022355


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010249658.15.97336E-46PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]
Swissprottr|P0CH30|RING1_GOSHI6E-42E3 ubiquitin-protein ligase RING1
trEMBLtr|M1AN35|M1AN35_SOLTU1E-44Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400026381}
TAIR10AT3G19950.11E-34RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7115534071155702-
GWHAAZE00000006mRNA7115534071155702-
GWHAAZE00000006exon7115534071155702-
GWHAAZE00000006CDS7115534071155702-
Transcript Sequence

Network for GWHGAAZE022355

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_1154827.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.745
SRR3591706second leaf3.209
SRR3591707mature leaf4.396
SRR3591708Shoot apex6.696
SRR3591709Stem6.001
SRR3591710White floral bud6.294
SRR3591711White flower7.060
SRR3591712Green floral bud6.301
SRR3591713Yellow flower4.683
SRP173429 SRR8316895Juvenile bud stage 5.408
SRR8316896Juvenile bud stage 7.693
SRR8316897Juvenile bud stage 2.400
SRR8316894Third green stage 1.955
SRR8316900Third green stage 5.041
SRR8316901Third green stage 7.594
SRR8316898Complete white stage 4.303
SRR8316899Complete white stage 11.911
SRR8316903Complete white stage 4.720
SRR8316902Silver flowering stage3.906
SRR8316904Silver flowering stage4.189
SRR8316905Silver flowering stage2.335
SRR8316906Gold flowering stage 5.372
SRR8316907Gold flowering stage 5.586
SRR8316908Gold flowering stage 7.310
SRP132670SRR6706286Control4.667
SRR6706287Light intensity 50%3.737
SRR6706288Light intensity 20%4.009
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.262
CNS0095593Slightly white alabastrum(diploid) 25.316
CNS0095594Slightly white alabastrum(diploid) 37.075
CNS0095595Whole white alabastrum(diploid) 24.663
CNS0095596Whole white alabastrum(diploid) 33.529
CNS0095597Whole white alabastrum(diploid) 45.749
CNS0095598Silvery flower (diploied) 16.899
CNS0095599Silvery flower (diploied) 27.913
CNS0095600Silvery flower (diploied) 37.885
CNS0095601Golden flower (diploid) 19.354
CNS0095602Golden flower (diploid) 26.113
CNS0095603Golden flower (diploid) 37.615
CNS0095604Slightly white alabastrum(tetraploid) 15.858
CNS0095605Slightly white alabastrum(tetraploid) 24.282
CNS0095606Slightly white alabastrum(tetraploid) 39.926
CNS0095607Whole white alabastrum(tetraploid) 16.085
CNS0095608Whole white alabastrum(tetraploid) 23.694
CNS0095609Whole white alabastrum(tetraploid) 37.766
CNS0095610Silvery flower (tetraploid) 17.071
CNS0095611Silvery flower (tetraploid) 27.421
CNS0095612Silvery flower (tetraploid) 37.873
CNS0095613Golden flower (tetraploid) 14.730
CNS0095614Golden flower (tetraploid) 24.968
CNS0095615Golden flower (tetraploid) 34.846
CRA001975CRR073297Stem 111.280
CRR073298Stem 28.851
CRR073299Stem 312.712
CRR073300Leaf 110.156
CRR073301Leaf 29.174
CRR073302Leaf 310.332
CRR073303Juvenile bud 114.365
CRR073304Juvenile bud 28.567
CRR073305Juvenile bud 315.508
CRR073306Third green 117.093
CRR073307Third green 211.101
CRR073308Third green 314.463
CRR073309Second white 126.525
CRR073310Second white 214.519
CRR073311Second white 311.909
CRR073312Silver flowering 111.327
CRR073313Silver flowering 215.648
CRR073314Silver flowering 312.765
CRR073315Gold flowering 13.881
CRR073316Gold flowering 27.169
CRR073317Gold flowering 36.775
CRR073318Tawny withering 112.394
CRR073319Tawny withering 211.194
CRR073320Tawny withering 310.582