Gene detail

Detail information of GWHGAAZE022363

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006388480.1	5.08381E-34	hypothetical protein POPTR_0175s00210g, partial [Populus trichocarpa]
COG	YP_004458431.1	2E-11	50S ribosomal protein L44E
Swissprot	tr\|O23290\|RL36A_ARATH	5E-35	60S ribosomal protein L36a
trEMBL	tr\|U7DYV5\|U7DYV5_POPTR	2E-34	Uncharacterized protein {ECO:0000313\|EMBL:ERP47394.1} (Fragment)
TAIR10	AT3G23390.1	4E-20	Zinc-binding ribosomal protein family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71239746	71240789	+
GWHAAZE00000006	mRNA	71239746	71240789	+
GWHAAZE00000006	exon	71239746	71239925	+
GWHAAZE00000006	exon	71240164	71240789	+
GWHAAZE00000006	CDS	71239746	71239925	+
GWHAAZE00000006	CDS	71240164	71240247	+
GWHAAZE00000006	three_prime_UTR	71240248	71240789	+

Transcript Sequence
>GWHTAAZE022393 GTGAACGTTCCGAAGACAAAGAAGACTTACTGCAAGAATAAGGCATGTAAGAAGCACACCTTGCATAAGGTTACCCAATATAAGAAGGGAAAGGATAGTTTGGCTGCACAGGGAAAGCGCCGTTATGATCGTAAGCAGTCAGGTTATGGTGGACAAACAAAACCTGTTTTCCACAAAAAGGAACAAGAGAGTTGGCGAGGAGGAACGAGAGCCAAGCACCTCTCAGGGAAGAGAGTGAGCAGGAACCACAAGTGTTTGAAGTGAAGTAATGTTCACAATGGTTACTTGGTAGTATGTATGCGTACAGGTATAGACTAACCTGAATGAATATAGGCATAGGCGCATAGCCCATTAGAGAAAGGGCTGCCAGGAGATGTATTGTCCTCTCTATAAGGGCAAGCCTTCATTTATGGGGAAAGGTTTAGCTTTGTAAGATTAGAGGTATGTCCTTTTGTATAATGAGAGGAACACAAGGGGTTAGTAATGACCTCTCAAGTGGGTAAAAGAATGGTGTACATGTCCTTTTGGATAGAGAGTGGGCCTTGAGTGTTTAATAACTACTCAAGTGTATAAAGGAGTAGTTTCTTTCTTCCAGTCGAGATGGTCGGTCCAGTGCCAGTGCAGTGTGGTAACAAAAAAGGCCAGAGCTCAAGCCACCAAGCCACTATCCTCTTGTTCCCGATAACTAATCAGTAGACTGGGGAGCCATTCGGAACCTGATCTTTCTGTGGTGGCTCCTTAGCTCAGTACCCTATACTACACCCTGATTTTCCTTTCAAGTTTTTGTTTCTTTCCCTTGTACATAT

Network for GWHGAAZE022363

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00935.20	Ribosomal_L44	18	63	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02929	RP-L44e, RPL44	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.832
	SRR3591706	second leaf	25.901
	SRR3591707	mature leaf	18.079
	SRR3591708	Shoot apex	43.381
	SRR3591709	Stem	26.730
	SRR3591710	White floral bud	31.480
	SRR3591711	White flower	39.737
	SRR3591712	Green floral bud	42.856
	SRR3591713	Yellow flower	28.046
SRP173429	SRR8316895	Juvenile bud stage	11.731
	SRR8316896	Juvenile bud stage	9.780
	SRR8316897	Juvenile bud stage	5.944
	SRR8316894	Third green stage	4.749
	SRR8316900	Third green stage	24.151
	SRR8316901	Third green stage	29.694
	SRR8316898	Complete white stage	8.173
	SRR8316899	Complete white stage	20.630
	SRR8316903	Complete white stage	13.514
	SRR8316902	Silver flowering stage	4.268
	SRR8316904	Silver flowering stage	10.833
	SRR8316905	Silver flowering stage	1.461
	SRR8316906	Gold flowering stage	10.617
	SRR8316907	Gold flowering stage	11.938
	SRR8316908	Gold flowering stage	20.044
SRP132670	SRR6706286	Control	23.163
	SRR6706287	Light intensity 50%	24.333
	SRR6706288	Light intensity 20%	25.724
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.887
	CNS0095593	Slightly white alabastrum(diploid) 2	32.207
	CNS0095594	Slightly white alabastrum(diploid) 3	29.731
	CNS0095595	Whole white alabastrum(diploid) 2	30.753
	CNS0095596	Whole white alabastrum(diploid) 3	28.822
	CNS0095597	Whole white alabastrum(diploid) 4	25.037
	CNS0095598	Silvery flower (diploied) 1	33.142
	CNS0095599	Silvery flower (diploied) 2	27.731
	CNS0095600	Silvery flower (diploied) 3	22.717
	CNS0095601	Golden flower (diploid) 1	21.957
	CNS0095602	Golden flower (diploid) 2	21.043
	CNS0095603	Golden flower (diploid) 3	20.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.079
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.577
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.871
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.691
	CNS0095610	Silvery flower (tetraploid) 1	38.839
	CNS0095611	Silvery flower (tetraploid) 2	26.826
	CNS0095612	Silvery flower (tetraploid) 3	25.260
	CNS0095613	Golden flower (tetraploid) 1	24.038
	CNS0095614	Golden flower (tetraploid) 2	30.786
	CNS0095615	Golden flower (tetraploid) 3	18.902
CRA001975	CRR073297	Stem 1	12.190
	CRR073298	Stem 2	11.409
	CRR073299	Stem 3	10.905
	CRR073300	Leaf 1	10.625
	CRR073301	Leaf 2	11.233
	CRR073302	Leaf 3	15.140
	CRR073303	Juvenile bud 1	7.138
	CRR073304	Juvenile bud 2	12.845
	CRR073305	Juvenile bud 3	2.854
	CRR073306	Third green 1	3.140
	CRR073307	Third green 2	4.180
	CRR073308	Third green 3	3.659
	CRR073309	Second white 1	4.336
	CRR073310	Second white 2	3.789
	CRR073311	Second white 3	0.452
	CRR073312	Silver flowering 1	2.306
	CRR073313	Silver flowering 2	4.225
	CRR073314	Silver flowering 3	2.289
	CRR073315	Gold flowering 1	5.534
	CRR073316	Gold flowering 2	7.331
	CRR073317	Gold flowering 3	3.312
	CRR073318	Tawny withering 1	3.281
	CRR073319	Tawny withering 2	8.683
	CRR073320	Tawny withering 3	4.299