Detail information of GWHGAAZE022383


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP37541.13.45333E-69hypothetical protein JCGZ_05980 [Jatropha curcas]
Swissprottr|P0CH30|RING1_GOSHI4E-68E3 ubiquitin-protein ligase RING1
trEMBLtr|A0A067KMS3|A0A067KMS3_JATCU1E-69Uncharacterized protein {ECO:0000313|EMBL:KDP37541.1}
TAIR10AT3G19950.12E-49RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7169747771698040-
GWHAAZE00000006mRNA7169747771698040-
GWHAAZE00000006exon7169747771698040-
GWHAAZE00000006CDS7169747771698040-
Transcript Sequence

Network for GWHGAAZE022383

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13923.7zf-C3HC4_254954.80E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.237
SRR3591706second leaf8.401
SRR3591707mature leaf7.687
SRR3591708Shoot apex14.682
SRR3591709Stem10.383
SRR3591710White floral bud17.906
SRR3591711White flower21.963
SRR3591712Green floral bud16.367
SRR3591713Yellow flower15.039
SRP173429 SRR8316895Juvenile bud stage 12.229
SRR8316896Juvenile bud stage 20.767
SRR8316897Juvenile bud stage 4.417
SRR8316894Third green stage 6.714
SRR8316900Third green stage 15.325
SRR8316901Third green stage 17.390
SRR8316898Complete white stage 8.004
SRR8316899Complete white stage 29.757
SRR8316903Complete white stage 13.588
SRR8316902Silver flowering stage8.452
SRR8316904Silver flowering stage12.112
SRR8316905Silver flowering stage5.757
SRR8316906Gold flowering stage 16.449
SRR8316907Gold flowering stage 19.646
SRR8316908Gold flowering stage 17.632
SRP132670SRR6706286Control14.065
SRR6706287Light intensity 50%13.151
SRR6706288Light intensity 20%14.391
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.379
CNS0095593Slightly white alabastrum(diploid) 214.326
CNS0095594Slightly white alabastrum(diploid) 319.744
CNS0095595Whole white alabastrum(diploid) 216.845
CNS0095596Whole white alabastrum(diploid) 310.719
CNS0095597Whole white alabastrum(diploid) 411.350
CNS0095598Silvery flower (diploied) 125.554
CNS0095599Silvery flower (diploied) 217.690
CNS0095600Silvery flower (diploied) 323.918
CNS0095601Golden flower (diploid) 117.366
CNS0095602Golden flower (diploid) 225.764
CNS0095603Golden flower (diploid) 323.660
CNS0095604Slightly white alabastrum(tetraploid) 118.668
CNS0095605Slightly white alabastrum(tetraploid) 213.544
CNS0095606Slightly white alabastrum(tetraploid) 327.056
CNS0095607Whole white alabastrum(tetraploid) 115.494
CNS0095608Whole white alabastrum(tetraploid) 28.161
CNS0095609Whole white alabastrum(tetraploid) 314.971
CNS0095610Silvery flower (tetraploid) 116.361
CNS0095611Silvery flower (tetraploid) 220.741
CNS0095612Silvery flower (tetraploid) 319.339
CNS0095613Golden flower (tetraploid) 115.043
CNS0095614Golden flower (tetraploid) 215.056
CNS0095615Golden flower (tetraploid) 311.835
CRA001975CRR073297Stem 123.119
CRR073298Stem 220.006
CRR073299Stem 327.836
CRR073300Leaf 117.903
CRR073301Leaf 220.176
CRR073302Leaf 319.774
CRR073303Juvenile bud 130.348
CRR073304Juvenile bud 218.918
CRR073305Juvenile bud 330.052
CRR073306Third green 128.065
CRR073307Third green 224.269
CRR073308Third green 324.164
CRR073309Second white 152.489
CRR073310Second white 232.670
CRR073311Second white 326.003
CRR073312Silver flowering 119.594
CRR073313Silver flowering 236.194
CRR073314Silver flowering 330.601
CRR073315Gold flowering 112.312
CRR073316Gold flowering 214.366
CRR073317Gold flowering 316.292
CRR073318Tawny withering 126.637
CRR073319Tawny withering 224.516
CRR073320Tawny withering 330.004