Detail information of GWHGAAZE022386


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006365590.14.47324E-95PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Solanum tuberosum]
Swissprottr|Q9LT17|BBR_ARATH2E-74E3 ubiquitin ligase BIG BROTHER-related
trEMBLtr|D7TEV5|D7TEV5_VITVI1E-93Putative uncharacterized protein {ECO:0000313|EMBL:CBI29028.3}
TAIR10AT3G19910.13E-50RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7172357071725476+
GWHAAZE00000006mRNA7172357071725476+
GWHAAZE00000006exon7172357071723879+
GWHAAZE00000006exon7172398471724036+
GWHAAZE00000006exon7172476071724804+
GWHAAZE00000006exon7172490571725026+
GWHAAZE00000006exon7172511971725227+
GWHAAZE00000006exon7172542371725476+
GWHAAZE00000006CDS7172357071723879+
GWHAAZE00000006CDS7172398471724036+
GWHAAZE00000006CDS7172476071724804+
GWHAAZE00000006CDS7172490571725026+
GWHAAZE00000006CDS7172511971725227+
GWHAAZE00000006CDS7172542371725476+
Transcript Sequence

Network for GWHGAAZE022386

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21762181.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.237
SRR3591706second leaf11.136
SRR3591707mature leaf10.999
SRR3591708Shoot apex10.684
SRR3591709Stem27.309
SRR3591710White floral bud26.236
SRR3591711White flower38.217
SRR3591712Green floral bud18.103
SRR3591713Yellow flower49.438
SRP173429 SRR8316895Juvenile bud stage 9.554
SRR8316896Juvenile bud stage 18.619
SRR8316897Juvenile bud stage 12.426
SRR8316894Third green stage 7.760
SRR8316900Third green stage 18.553
SRR8316901Third green stage 21.025
SRR8316898Complete white stage 13.685
SRR8316899Complete white stage 28.489
SRR8316903Complete white stage 16.518
SRR8316902Silver flowering stage14.028
SRR8316904Silver flowering stage18.925
SRR8316905Silver flowering stage9.452
SRR8316906Gold flowering stage 32.217
SRR8316907Gold flowering stage 26.533
SRR8316908Gold flowering stage 48.571
SRP132670SRR6706286Control14.521
SRR6706287Light intensity 50%15.556
SRR6706288Light intensity 20%15.018
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.635
CNS0095593Slightly white alabastrum(diploid) 216.874
CNS0095594Slightly white alabastrum(diploid) 320.121
CNS0095595Whole white alabastrum(diploid) 213.741
CNS0095596Whole white alabastrum(diploid) 313.315
CNS0095597Whole white alabastrum(diploid) 413.087
CNS0095598Silvery flower (diploied) 117.208
CNS0095599Silvery flower (diploied) 213.911
CNS0095600Silvery flower (diploied) 334.422
CNS0095601Golden flower (diploid) 122.700
CNS0095602Golden flower (diploid) 227.681
CNS0095603Golden flower (diploid) 323.420
CNS0095604Slightly white alabastrum(tetraploid) 120.211
CNS0095605Slightly white alabastrum(tetraploid) 219.359
CNS0095606Slightly white alabastrum(tetraploid) 328.057
CNS0095607Whole white alabastrum(tetraploid) 110.012
CNS0095608Whole white alabastrum(tetraploid) 214.161
CNS0095609Whole white alabastrum(tetraploid) 316.298
CNS0095610Silvery flower (tetraploid) 150.424
CNS0095611Silvery flower (tetraploid) 246.136
CNS0095612Silvery flower (tetraploid) 332.900
CNS0095613Golden flower (tetraploid) 139.557
CNS0095614Golden flower (tetraploid) 242.294
CNS0095615Golden flower (tetraploid) 348.026
CRA001975CRR073297Stem 123.367
CRR073298Stem 222.868
CRR073299Stem 319.117
CRR073300Leaf 116.599
CRR073301Leaf 219.664
CRR073302Leaf 317.021
CRR073303Juvenile bud 117.105
CRR073304Juvenile bud 214.597
CRR073305Juvenile bud 316.324
CRR073306Third green 111.825
CRR073307Third green 210.702
CRR073308Third green 313.430
CRR073309Second white 115.236
CRR073310Second white 213.102
CRR073311Second white 310.990
CRR073312Silver flowering 111.491
CRR073313Silver flowering 210.182
CRR073314Silver flowering 311.794
CRR073315Gold flowering 111.683
CRR073316Gold flowering 218.121
CRR073317Gold flowering 311.918
CRR073318Tawny withering 112.218
CRR073319Tawny withering 29.064
CRR073320Tawny withering 314.708