Gene detail

Detail information of GWHGAAZE022389

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD74168.1	0	chalcone synthase [Nelumbo nucifera]
COG	YP_002363655.1	1E-38	Naringenin-chalcone synthase
Swissprot	tr\|Q9ZRR8\|CHS1_CASGL	0	Chalcone synthase
trEMBL	tr\|D6C6K7\|D6C6K7_NELNU	0	Chalcone synthase {ECO:0000313\|EMBL:ADD74168.1}
TAIR10	AT5G13930.1	9E-176	Chalcone and stilbene synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71734715	71735992	-
GWHAAZE00000006	mRNA	71734715	71735992	-
GWHAAZE00000006	exon	71734715	71735065	-
GWHAAZE00000006	exon	71735166	71735704	-
GWHAAZE00000006	exon	71735815	71735992	-
GWHAAZE00000006	CDS	71735815	71735992	-
GWHAAZE00000006	CDS	71735166	71735704	-
GWHAAZE00000006	CDS	71734715	71735065	-

Transcript Sequence
>GWHTAAZE022419 ATGGTTACTGTCGAGGAGGTTCGTAATGCTCAACGCGCCCAAGGCCCTGCAACCGTCATGGCCATTGGTACTGCGACTCCTGCCAACTGCGTCGACCAAAGCGATTACCCCGATTTCTACTTTCGTATCACTAACAGTGAACACAGGACTGAGCTCAAAGAAAAATTCAAGCGCATGTGCGAGAAATCTACAATCAAGAAGCGTTACATGCACTTGACAGAGGAAATCTTGAAAGAAAAACCGGATATGTGCGCATACATGGCACCTTCTCTAGATGCTAGGCAAGATATTGTGGTGGTAGAAGTACCGAAACTTGGAAAAGAAGCGGCAACAAAGGCGATCAAGGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTAGTCTTTTGCACTACTAGTGGTGTTGACATGCCCGGTGCGGACTACCAGCTCACCAAGCTCCTCGGCCTACGCTCTTCGGTCAAGCGCCTCATGATGTACCAACAGGGTTGCTTTGCTGGCGGCACAGTTCTTCGTCTAGCCAAGGACCTAGCCGAGAACAACAAAGGTGCTCGCGTGCTTGTTGTTTGCTCCGAGATCACCGCGGTCACATTCCGTGGGCCTAGTGATACGCACCTTGACAGCCTTGTGGGTCAGGCCTTGTTTGGTGATGGTGCAGCCGCTATGATCATTGGTTCGGACCCAATGCCCGAGGTCGAGAAGCCGTTATTTGAGCTACTAATATCAAAGAACATAGAGAAGAGCCTTGTGGAGGCATTCAAGCCTTTGGGTATATCGGATTGGAACTCGATCTTTTGGATTGCTCATCCGGGTGGACCGGCTATTTTGGACCAAGTGGAAAAGAAGTTGGCCCTTAAGCCTGAGAAGATGGGAGCTACAAGGCATGTGCTTAGCGAGTATGGAAATATGTCTAGTGCTTGTGTGCTGTTTATAATGGATGAGATGAGGAAGAAATCGGCCAACGAGGGGCTTAAGACCACCGGAGAGGGGCTCGAATGGGGTGTGCTCTTTGGGTTCGGACCAGGGCTCACCGTTGAGACTGTTGTTCTCCATAGTGTGTCCACTTAG

Network for GWHGAAZE022389

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00195.20	Chal_sti_synt_N	5	228	1.50E-124
PF02797.16	Chal_sti_synt_C	240	353	6.20E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00660	CHS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.348
	SRR3591706	second leaf	6.921
	SRR3591707	mature leaf	0.589
	SRR3591708	Shoot apex	7.232
	SRR3591709	Stem	4.139
	SRR3591710	White floral bud	0.448
	SRR3591711	White flower	0.314
	SRR3591712	Green floral bud	0.245
	SRR3591713	Yellow flower	0.025
SRP173429	SRR8316895	Juvenile bud stage	3.448
	SRR8316896	Juvenile bud stage	2.931
	SRR8316897	Juvenile bud stage	0.360
	SRR8316894	Third green stage	0.376
	SRR8316900	Third green stage	1.194
	SRR8316901	Third green stage	1.262
	SRR8316898	Complete white stage	1.012
	SRR8316899	Complete white stage	2.495
	SRR8316903	Complete white stage	2.435
	SRR8316902	Silver flowering stage	0.887
	SRR8316904	Silver flowering stage	0.242
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.287
	SRR8316907	Gold flowering stage	0.346
	SRR8316908	Gold flowering stage	0.575
SRP132670	SRR6706286	Control	0.500
	SRR6706287	Light intensity 50%	0.727
	SRR6706288	Light intensity 20%	0.691
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.462
	CNS0095593	Slightly white alabastrum(diploid) 2	0.230
	CNS0095594	Slightly white alabastrum(diploid) 3	3.971
	CNS0095595	Whole white alabastrum(diploid) 2	0.199
	CNS0095596	Whole white alabastrum(diploid) 3	0.182
	CNS0095597	Whole white alabastrum(diploid) 4	0.373
	CNS0095598	Silvery flower (diploied) 1	0.492
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.614
	CNS0095601	Golden flower (diploid) 1	0.174
	CNS0095602	Golden flower (diploid) 2	0.105
	CNS0095603	Golden flower (diploid) 3	0.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.542
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.801
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.379
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.671
	CNS0095610	Silvery flower (tetraploid) 1	2.343
	CNS0095611	Silvery flower (tetraploid) 2	0.026
	CNS0095612	Silvery flower (tetraploid) 3	0.025
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	2.036
	CNS0095615	Golden flower (tetraploid) 3	0.024
CRA001975	CRR073297	Stem 1	3.787
	CRR073298	Stem 2	2.672
	CRR073299	Stem 3	2.321
	CRR073300	Leaf 1	1.711
	CRR073301	Leaf 2	2.790
	CRR073302	Leaf 3	1.126
	CRR073303	Juvenile bud 1	0.621
	CRR073304	Juvenile bud 2	0.644
	CRR073305	Juvenile bud 3	1.588
	CRR073306	Third green 1	0.016
	CRR073307	Third green 2	0.441
	CRR073308	Third green 3	1.569
	CRR073309	Second white 1	0.099
	CRR073310	Second white 2	3.224
	CRR073311	Second white 3	1.123
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.406
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	40.978
	CRR073316	Gold flowering 2	24.301
	CRR073317	Gold flowering 3	13.218
	CRR073318	Tawny withering 1	0.051
	CRR073319	Tawny withering 2	0.612
	CRR073320	Tawny withering 3	0.101