Detail information of GWHGAAZE022399


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI27138.30unnamed protein product [Vitis vinifera]
trEMBLtr|F6HF47|F6HF47_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50987.1}
TAIR10AT5G23110.15E-175Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7190784871910631-
GWHAAZE00000006mRNA7190784871910631-
GWHAAZE00000006exon7191005371910631-
GWHAAZE00000006exon7190901171909928-
GWHAAZE00000006exon7190847771908665-
GWHAAZE00000006exon7190784871907988-
GWHAAZE00000006CDS7191005371910631-
GWHAAZE00000006CDS7190901171909928-
GWHAAZE00000006CDS7190847771908665-
GWHAAZE00000006CDS7190784871907988-
Transcript Sequence

Network for GWHGAAZE022399

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_35806071.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.366
SRR3591706second leaf9.694
SRR3591707mature leaf11.716
SRR3591708Shoot apex15.491
SRR3591709Stem16.294
SRR3591710White floral bud13.411
SRR3591711White flower14.488
SRR3591712Green floral bud17.741
SRR3591713Yellow flower11.586
SRP173429 SRR8316895Juvenile bud stage 9.071
SRR8316896Juvenile bud stage 10.733
SRR8316897Juvenile bud stage 4.701
SRR8316894Third green stage 4.055
SRR8316900Third green stage 11.004
SRR8316901Third green stage 10.337
SRR8316898Complete white stage 1.571
SRR8316899Complete white stage 7.606
SRR8316903Complete white stage 5.470
SRR8316902Silver flowering stage3.645
SRR8316904Silver flowering stage5.387
SRR8316905Silver flowering stage2.208
SRR8316906Gold flowering stage 10.671
SRR8316907Gold flowering stage 7.638
SRR8316908Gold flowering stage 8.011
SRP132670SRR6706286Control6.986
SRR6706287Light intensity 50%8.425
SRR6706288Light intensity 20%8.793
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.878
CNS0095593Slightly white alabastrum(diploid) 211.229
CNS0095594Slightly white alabastrum(diploid) 311.412
CNS0095595Whole white alabastrum(diploid) 29.828
CNS0095596Whole white alabastrum(diploid) 310.738
CNS0095597Whole white alabastrum(diploid) 412.152
CNS0095598Silvery flower (diploied) 111.442
CNS0095599Silvery flower (diploied) 210.653
CNS0095600Silvery flower (diploied) 312.473
CNS0095601Golden flower (diploid) 112.002
CNS0095602Golden flower (diploid) 214.932
CNS0095603Golden flower (diploid) 313.371
CNS0095604Slightly white alabastrum(tetraploid) 113.106
CNS0095605Slightly white alabastrum(tetraploid) 212.528
CNS0095606Slightly white alabastrum(tetraploid) 315.836
CNS0095607Whole white alabastrum(tetraploid) 111.663
CNS0095608Whole white alabastrum(tetraploid) 210.449
CNS0095609Whole white alabastrum(tetraploid) 310.821
CNS0095610Silvery flower (tetraploid) 111.099
CNS0095611Silvery flower (tetraploid) 29.941
CNS0095612Silvery flower (tetraploid) 311.828
CNS0095613Golden flower (tetraploid) 17.471
CNS0095614Golden flower (tetraploid) 210.978
CNS0095615Golden flower (tetraploid) 314.088
CRA001975CRR073297Stem 113.402
CRR073298Stem 213.372
CRR073299Stem 36.234
CRR073300Leaf 114.799
CRR073301Leaf 215.709
CRR073302Leaf 36.490
CRR073303Juvenile bud 111.254
CRR073304Juvenile bud 26.076
CRR073305Juvenile bud 317.345
CRR073306Third green 14.421
CRR073307Third green 23.005
CRR073308Third green 34.747
CRR073309Second white 15.161
CRR073310Second white 28.220
CRR073311Second white 37.640
CRR073312Silver flowering 17.771
CRR073313Silver flowering 26.416
CRR073314Silver flowering 36.860
CRR073315Gold flowering 15.222
CRR073316Gold flowering 28.736
CRR073317Gold flowering 35.117
CRR073318Tawny withering 113.694
CRR073319Tawny withering 218.864
CRR073320Tawny withering 37.754