Gene detail

Detail information of GWHGAAZE022425

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27464.3	0	unnamed protein product [Vitis vinifera]
COG	YP_001193251.1	0.00000002	ankyrin
Swissprot	tr\|Q9C6C3\|AGD2_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD2
trEMBL	tr\|A0A068URG1\|A0A068URG1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_50 {ECO:0000313\|EMBL:CDP11026.1}
TAIR10	AT1G60860.1	0	ARF-GAP domain 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72361783	72369954	-
GWHAAZE00000006	mRNA	72361783	72369954	-
GWHAAZE00000006	exon	72369816	72369954	-
GWHAAZE00000006	exon	72369051	72369121	-
GWHAAZE00000006	exon	72368430	72368492	-
GWHAAZE00000006	exon	72368068	72368112	-
GWHAAZE00000006	exon	72367470	72367535	-
GWHAAZE00000006	exon	72366851	72366898	-
GWHAAZE00000006	exon	72366645	72366740	-
GWHAAZE00000006	exon	72366522	72366563	-
GWHAAZE00000006	exon	72366079	72366294	-
GWHAAZE00000006	exon	72365793	72365924	-
GWHAAZE00000006	exon	72364520	72364720	-
GWHAAZE00000006	exon	72364338	72364421	-
GWHAAZE00000006	exon	72363965	72364231	-
GWHAAZE00000006	exon	72363543	72363658	-
GWHAAZE00000006	exon	72362842	72362917	-
GWHAAZE00000006	exon	72362088	72362536	-
GWHAAZE00000006	exon	72361783	72361897	-
GWHAAZE00000006	CDS	72369816	72369954	-
GWHAAZE00000006	CDS	72369051	72369121	-
GWHAAZE00000006	CDS	72368430	72368492	-
GWHAAZE00000006	CDS	72368068	72368112	-
GWHAAZE00000006	CDS	72367470	72367535	-
GWHAAZE00000006	CDS	72366851	72366898	-
GWHAAZE00000006	CDS	72366645	72366740	-
GWHAAZE00000006	CDS	72366522	72366563	-
GWHAAZE00000006	CDS	72366079	72366294	-
GWHAAZE00000006	CDS	72365793	72365924	-
GWHAAZE00000006	CDS	72364520	72364720	-
GWHAAZE00000006	CDS	72364338	72364421	-
GWHAAZE00000006	CDS	72363965	72364231	-
GWHAAZE00000006	CDS	72363543	72363658	-
GWHAAZE00000006	CDS	72362842	72362917	-
GWHAAZE00000006	CDS	72362088	72362536	-
GWHAAZE00000006	CDS	72361783	72361897	-

Transcript Sequence
>GWHTAAZE022455 ATGGGGACCTTTGCTAATGTCTCTCCCGCTCCGCACAGGGAAGCTCTTGGAGAAGCGTGCCAAGGAGACAATGTATTTGCAGACTCATTAGAAGCATTTGCTGGTGACCAAGATGACCCTGTCGGCGTGTCTGTTGGAGGTCCAATCATGTCCAAGTTCATTTCTGTGTTCCGCGAGCTTGCAACTTTTAAGGAGCTCCTTCGTTCCCAAGCAGAGCACGTGCTTGTTGATCGCGTGTCTCAATTTTTGTCTGTTGATCTGCAAGATGCAAAGGAATCACGTCGGCGGTTAGACAAAGCTATGTATACTTATGATCAGGCACGCGATAGATTTGCTTCTTTGAAGAAGAGTACACGAGATGAAGTTGTCTCTGAGCTAGAGGAGGATCTACACAACTCGAAGTCAGCATTTGAGAGAAGCCGTTTCAATCTAGTTAGTGCTCTCATGAATATCGAAGCAAAAAAGAAGTATGACTTCTTGGAATCTTTTAGTGCAATTATGGATGCTCATCTGAGATATTTTAAGTTGGGATATGACTTGCTGAGCCAAATGGAGCCATTCATTCACCAGGTGTTGACATATGCACAACAATCAAAAGAATTGGCAAATTCTGAACAAGACAAACTTGCAAAAAGAATTCAAGAGTTTAGGACACAAGCAGAGATGGACCAATTGCGAGCATCCAGTAATGTTGGAACCTCAACAACTGCTGTTGGTATTAATGGTGTTGGTATGAGTTCCAACAAAAACATAGACGCACTTATGCAATCAACTGCAAATGGGAGGGTCCAAACAATCAAGCAAGGGTATCTCTTAAAACGATCATCAAACCTGAGAGCAGATTGGAAGAGGAGATTTTTTGTACTCGATAGTCATGGCGACTTATATTATCATGGACACAGGGGTAGCAAAAATGGGAATTCTCGGTTTCAGAAGAGTAGTTCTACAGAACAACTCAACAGTGTCTTTAGTAGATTTCGTGCAAGGCACTTTGGCGAGGAAGATATCGGCTGTAATACTGTTGATCTTCATACCTCAACAATAAAGATTGATGCTGAGGATACAGATCTGCGGCTGTGCTTCAGAATAATTTCTCCCTCGAAAACCTACACATTGCAGGCTGAGAATGAAGCAGATAGGATTGACTGGATGAACAAAATCTCAGGAGTTATTGCATCCCTTTTGAATTCTCAAATCCAGCAGTTACATACTGGGAAATTCAATATGGAGAGTGCTAACTATAGTAATAATCATGATGACCGATTACTTGATGATGATGAAAGTACAACGGATGATGTGAAAGTAAACCGACCAGATTCTGTTTCTACTATTCTCAGAAAAATTCCCGGTAATGATCTATGTGCAGAATGCAGTGCTCATGATCCAGATTGGGCATCTCTAAATCTTGGAATTTTGATGTGCATTGAATGCTCTGGCATTCACCGCAATCTTGGTGTTCAGATATCAAAGGTGAGGTCAATAAGATTAGACGTTAAGGTTTGGGAACCTACAATCTTGGACTTATTTCGTACTTTGGGTAATTCATATTGCAACTCTCTCTGGGAGAGTCTGCTACCAATTGATAGAGAGGGTCTCTTACCAGTTACAAAACCGAGCCCCAAAGATGCCATTCAACAAAAGGAGAAATTCATTATAGCAAAGTATGTCGAGAAACTGCTAGTCAATAAAGAAGCTACTGTATCTACCACCGGCATCTGGGAAGCTGTTAAGGGCGGCAATATAAGGGAAGTATATCGCTTTATTGTGACATCAGGTATAAATATTATCAACACGGTTTACGATGAGGTTGCTGGTGTGGATTTGTACCACAATGTTGATGAACAATATTCAGAGGAAGGCTCTGAAACTGTGGAAAACAAACAATATGATCCAAAAAACTGTCACAAAATTAAGGATTCCAACAAGCCAGGAAATTGTCTGCAAGGTTGTTCTTTATTACATCTGGCATGCCACTCTGGCAATCCTGTGATGGTTGAGCTATTGCTGCAATTTGGTGCCAACATAAACATGCGTGACTACCATGGAAGGACCCCTCTGCACCACTGCATCTGCTCTGGAAATAACAACTTGGCAAAATTTCTTCTTAGAAGAGGTGCGCGTACATCAATTAAAGATGGCGGGGGACTAGGTGTGCTTGACAGGGCAATGGAGATGGGAGCAATAACCGATGACCAGCTTTTTGTTTTGCTTTCAGAGAACAAGTGA

Network for GWHGAAZE022425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16746.6	BAR_3	15	208	1.30E-27
PF00169.30	PH	266	391	2.20E-12
PF01412.19	ArfGap	442	563	1.30E-33
PF12796.8	Ank_2	641	712	3.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12489	ACAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005096	molecular_function	GTPase activator activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.495
	SRR3591706	second leaf	11.326
	SRR3591707	mature leaf	13.668
	SRR3591708	Shoot apex	13.735
	SRR3591709	Stem	27.750
	SRR3591710	White floral bud	16.878
	SRR3591711	White flower	14.606
	SRR3591712	Green floral bud	14.425
	SRR3591713	Yellow flower	16.495
SRP173429	SRR8316895	Juvenile bud stage	9.479
	SRR8316896	Juvenile bud stage	11.843
	SRR8316897	Juvenile bud stage	5.570
	SRR8316894	Third green stage	5.907
	SRR8316900	Third green stage	15.819
	SRR8316901	Third green stage	16.111
	SRR8316898	Complete white stage	6.742
	SRR8316899	Complete white stage	17.765
	SRR8316903	Complete white stage	13.315
	SRR8316902	Silver flowering stage	8.653
	SRR8316904	Silver flowering stage	13.987
	SRR8316905	Silver flowering stage	6.483
	SRR8316906	Gold flowering stage	17.511
	SRR8316907	Gold flowering stage	15.702
	SRR8316908	Gold flowering stage	19.396
SRP132670	SRR6706286	Control	6.993
	SRR6706287	Light intensity 50%	7.226
	SRR6706288	Light intensity 20%	9.397
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.433
	CNS0095593	Slightly white alabastrum(diploid) 2	8.494
	CNS0095594	Slightly white alabastrum(diploid) 3	8.336
	CNS0095595	Whole white alabastrum(diploid) 2	11.016
	CNS0095596	Whole white alabastrum(diploid) 3	9.629
	CNS0095597	Whole white alabastrum(diploid) 4	9.846
	CNS0095598	Silvery flower (diploied) 1	13.244
	CNS0095599	Silvery flower (diploied) 2	12.444
	CNS0095600	Silvery flower (diploied) 3	18.695
	CNS0095601	Golden flower (diploid) 1	12.816
	CNS0095602	Golden flower (diploid) 2	19.613
	CNS0095603	Golden flower (diploid) 3	17.384
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.569
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.973
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.303
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.059
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.676
	CNS0095610	Silvery flower (tetraploid) 1	15.038
	CNS0095611	Silvery flower (tetraploid) 2	18.154
	CNS0095612	Silvery flower (tetraploid) 3	14.496
	CNS0095613	Golden flower (tetraploid) 1	10.542
	CNS0095614	Golden flower (tetraploid) 2	15.953
	CNS0095615	Golden flower (tetraploid) 3	17.582
CRA001975	CRR073297	Stem 1	10.019
	CRR073298	Stem 2	9.175
	CRR073299	Stem 3	7.565
	CRR073300	Leaf 1	9.037
	CRR073301	Leaf 2	10.158
	CRR073302	Leaf 3	6.517
	CRR073303	Juvenile bud 1	7.289
	CRR073304	Juvenile bud 2	5.546
	CRR073305	Juvenile bud 3	6.767
	CRR073306	Third green 1	7.488
	CRR073307	Third green 2	6.324
	CRR073308	Third green 3	7.778
	CRR073309	Second white 1	5.738
	CRR073310	Second white 2	6.251
	CRR073311	Second white 3	5.839
	CRR073312	Silver flowering 1	6.577
	CRR073313	Silver flowering 2	7.736
	CRR073314	Silver flowering 3	4.923
	CRR073315	Gold flowering 1	2.758
	CRR073316	Gold flowering 2	4.153
	CRR073317	Gold flowering 3	1.779
	CRR073318	Tawny withering 1	17.104
	CRR073319	Tawny withering 2	9.527
	CRR073320	Tawny withering 3	16.622