Gene detail

Detail information of GWHGAAZE022428

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007222111.1	0	hypothetical protein PRUPE_ppa007664mg [Prunus persica]
COG	YP_004270459.1	2E-64	aldehyde reductase
Swissprot	tr\|Q84TF0\|AKRCA_ARATH	6E-83	Aldo-keto reductase family 4 member C10
trEMBL	tr\|M5XVW7\|M5XVW7_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23310.1}
TAIR10	AT2G37790.1	4E-69	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72421436	72424822	-
GWHAAZE00000006	mRNA	72421436	72424822	-
GWHAAZE00000006	exon	72421436	72421699	-
GWHAAZE00000006	exon	72423206	72423460	-
GWHAAZE00000006	exon	72424256	72424822	-
GWHAAZE00000006	CDS	72424256	72424822	-
GWHAAZE00000006	CDS	72423206	72423460	-
GWHAAZE00000006	CDS	72421436	72421699	-

Transcript Sequence
>GWHTAAZE022458 ATGAAAGGAAAAATTGGAACACCAGGAAGCTATTTTCTTTTGAACACCGGGGCCAAGATTCCTGCCATAGGGCTTGGGACTTGGCAGAGCGGCGGTGAACTCTGTGTTGACGCCGTAAAAACCGCACTATCATTCGGATACCGTCAAATAGATTGTGCCCATCTTTATGGAAACGAGATCGAGGTTGGGGAAGCACTAGCCGAGGCTTTTAGAGGTTCGCTAAAGAGAGAGGACATTTTCTTGGCCTCTAAGCTTTATTGTACTATGAATTCCATCAATAAGATTGAGAAATCTGTTGAAGTGTCCCTCAAGAACCTTGGAGTTTCGTACTTGGATCTCTATTTGATGCATTGGCCCGAGAGTTCAGCGTTTGGGGATGCTACTGATCCTCCTGCACATTCGGGGAGTGAGTACAGGCAATTCTTGAATCGATTGAAAACAACGTGGAAAGCAATGGAAGGGCTGGTTGAGTTGGGTCTTGTTCGAGCTATTGGCGTTAGCAATTTCAATGTACAACAGATAAAAGAATTGCTTAAATTTGCCAAAATTGTACCCGCAGTCAATCAGGTGGAGTTGCATCCTTTTTGGAGGCAAGATGAGCTAGTGAAAGTCTGTAAATCGAGAGGTATCCATGTATCTGCACACACACCATTAGGAGTACCAGCTTCCTCTTCTGGATCAGAAAGTGGATCATCAGGTGGGGAAGATGAACCTGGGACGCCACGCATTTCATTTAGACGTTCAAGATCAGTTCACGGTCCGATGTTGAAATTGTCAGTTGTTGCAGAGATAGCAGACAAGCATAAAAAGACTCCTGAACAGGTTATTTTGAGGTGGGGGCTTCAAAGAGGAACAAGCGTGCTACCATGTAGCGTGAAGCCAGACCGGATCAGGACAAACATAGACATATTCAATTGGTCATTATCAGAGGATGAATGGAATCGGTTGAACCAAATAGAGCCACAGGTATGTCTCTTTGGGAATGGCCCTCTAAACAACTTCTCCGAAACTAGTGGTTTTGTCCATGGAAGTGGCCCTCTTCAAGCTGTGTATGAAATGGAAGATGATGCGGAATCCAATAGCTGA

Network for GWHGAAZE022428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	23	320	3.20E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00002	AKR1A1, adh	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Pentose and glucuronate interconversions	map00040
		Glycerolipid metabolism	map00561
		Caprolactam degradation	map00930

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.403
	SRR3591706	second leaf	14.478
	SRR3591707	mature leaf	11.186
	SRR3591708	Shoot apex	14.925
	SRR3591709	Stem	24.414
	SRR3591710	White floral bud	21.137
	SRR3591711	White flower	16.939
	SRR3591712	Green floral bud	27.171
	SRR3591713	Yellow flower	25.789
SRP173429	SRR8316895	Juvenile bud stage	4.663
	SRR8316896	Juvenile bud stage	3.795
	SRR8316897	Juvenile bud stage	2.597
	SRR8316894	Third green stage	3.262
	SRR8316900	Third green stage	9.052
	SRR8316901	Third green stage	11.444
	SRR8316898	Complete white stage	5.727
	SRR8316899	Complete white stage	33.376
	SRR8316903	Complete white stage	9.589
	SRR8316902	Silver flowering stage	6.479
	SRR8316904	Silver flowering stage	9.342
	SRR8316905	Silver flowering stage	4.263
	SRR8316906	Gold flowering stage	32.741
	SRR8316907	Gold flowering stage	21.127
	SRR8316908	Gold flowering stage	37.929
SRP132670	SRR6706286	Control	16.139
	SRR6706287	Light intensity 50%	16.570
	SRR6706288	Light intensity 20%	17.905
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.309
	CNS0095593	Slightly white alabastrum(diploid) 2	12.167
	CNS0095594	Slightly white alabastrum(diploid) 3	7.991
	CNS0095595	Whole white alabastrum(diploid) 2	9.159
	CNS0095596	Whole white alabastrum(diploid) 3	5.070
	CNS0095597	Whole white alabastrum(diploid) 4	7.555
	CNS0095598	Silvery flower (diploied) 1	16.310
	CNS0095599	Silvery flower (diploied) 2	13.105
	CNS0095600	Silvery flower (diploied) 3	6.925
	CNS0095601	Golden flower (diploid) 1	14.748
	CNS0095602	Golden flower (diploid) 2	14.493
	CNS0095603	Golden flower (diploid) 3	13.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.797
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.299
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.328
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.876
	CNS0095610	Silvery flower (tetraploid) 1	5.739
	CNS0095611	Silvery flower (tetraploid) 2	3.399
	CNS0095612	Silvery flower (tetraploid) 3	4.219
	CNS0095613	Golden flower (tetraploid) 1	5.361
	CNS0095614	Golden flower (tetraploid) 2	12.465
	CNS0095615	Golden flower (tetraploid) 3	3.702
CRA001975	CRR073297	Stem 1	10.532
	CRR073298	Stem 2	8.798
	CRR073299	Stem 3	5.170
	CRR073300	Leaf 1	18.740
	CRR073301	Leaf 2	16.378
	CRR073302	Leaf 3	17.988
	CRR073303	Juvenile bud 1	19.548
	CRR073304	Juvenile bud 2	19.844
	CRR073305	Juvenile bud 3	27.778
	CRR073306	Third green 1	13.010
	CRR073307	Third green 2	9.437
	CRR073308	Third green 3	11.077
	CRR073309	Second white 1	10.232
	CRR073310	Second white 2	16.774
	CRR073311	Second white 3	15.954
	CRR073312	Silver flowering 1	29.618
	CRR073313	Silver flowering 2	31.292
	CRR073314	Silver flowering 3	26.456
	CRR073315	Gold flowering 1	13.570
	CRR073316	Gold flowering 2	10.062
	CRR073317	Gold flowering 3	12.511
	CRR073318	Tawny withering 1	38.163
	CRR073319	Tawny withering 2	33.344
	CRR073320	Tawny withering 3	31.391