Gene detail

Detail information of GWHGAAZE022429

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07974.1	0	unnamed protein product [Coffea canephora]
COG	YP_678860.1	4E-23	hypothetical protein CHU_2255
Swissprot	tr\|D2XNQ8\|FLOT1_MEDTR	0	Flotillin-like protein 1
trEMBL	tr\|A0A068UIB4\|A0A068UIB4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_29 {ECO:0000313\|EMBL:CDP07974.1}
TAIR10	AT5G25250.1	7E-161	SPFH/Band 7/PHB domain-containing membrane-associated protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72438945	72441214	+
GWHAAZE00000006	mRNA	72438945	72441214	+
GWHAAZE00000006	exon	72438945	72439871	+
GWHAAZE00000006	exon	72440466	72441214	+
GWHAAZE00000006	CDS	72438945	72439871	+
GWHAAZE00000006	CDS	72440466	72440996	+
GWHAAZE00000006	three_prime_UTR	72440997	72441214	+

Transcript Sequence
>GWHTAAZE022459 ATGAAGTACTGTGTAGCAAAGGCGTCCGAATTTTTGGTAATCACTGGAGCTGGCATCAAGGAAATGAAGATAGCAAAGAAGGCAATTATATGGCCATTGCAAAAATACAGAGTCATTGATATCACGCCCGTGAACTACACCTTTGAAGTTAATGCCATGAGCGCTGAGAAGCTTCCCTTCCTCCTCCCTGCTGTTTTCACTATCGGCCCGCAACCCGATAACGAAAGCCTAATCAAATACTCTAAGCTTCTCTCTCACCATGACCGCCATTCCCAAGATGTGAAGGAACTTGTCCAAGGTGTCATTGAGGGAGAAACCCGAGTCCTCGCTGCTTCAATGACAATGGAAGAAATTTTCAAAGGCACCAAAGAGTTTAAACAAGAGGTTTTTGAAAAAGTCCAACTCGAGCTCAACCAATTTGGGCTTTTGATTTACAATGCGAATATTAAGCAACTGGTTGATGTAAGAGGGCACGAGTATTTTTCATACTTGGGTCAAAAGACCCAAATGGAGGCAGCGAACCAAGCTAAAATCGACGTTGCTGAAGCCAAGATGAAAGGTGAGATTGGCGCTAAGCTTAGAGAAGGGCAGACTCTACAGAATGCTGCTAAGATTGATGCTGAAACAAAGGTGATAGCCACTCAAAGAGAGGGTCAGGGTAGAAAGGAGGAGATTAAGGTCAAGTCAGAGGTTAAGATTTTCGAGAACCAGAGAGAGGCCGACGTGGCTGAGGCGAATGCTGAGCTTGCAACAAAGAAGGCCGGGTGGAGCCAGCTGGCAAAGATGGCTGATGTGGAATCTGCTATGGCTGTCGCGATTAGGGAGGCTGAGTTGCAGCAGGAGGTCGAGAGGAAGAATGTGTTGACTCATACGGAGAGGCTCAAGGCTACATTCCTCAGCAAGGCCAGTGTTGATTACGAGATTAAGGTCCAAGAAGCAAACTGGGATTTCTACAAGAAACAAAAGGCCGCAGAAGCAGTACTCTACGAGAAAGAAAAGGCAGCTGAGGCTCAAAAGCTGGCAGTGGAAGCTCAACAATATGCCCGATTACAAGAAGCTGATGCAAAGCTCTACTCCAAAGGGAAGGAGGCCAAAGGAACACTTGCACTTGCTGAAGCACAAGGCTTTTACCTGAAGACCCTATCGGAAGCACTGGGAGGAGACTACAATGCGGTGAGAGATTACATGATGATTGACGGTGGAACATTCAAAGACATAGCCAAGATTAACGCTGATGCAATAAGGGGATTGCAACCGAAAATCAGCATATGGACGAATGGGGAGGCTGCAGCAGGAGGAAGTGGTGGTGTAGCGATGAAAGAGGTGGCCTCAGTTTACAAGGCATTGCCACCGTTGTTTCAGACTGTTCAGGAGCAAACTGGTATGTTGCCTCCACAGTGGCTGGGCAGTCTCCCTGGTTCTACCTCTCAGGTGGCTAAAACAAGCCACCGTGGCTAGTCATAATCAAATAGTACTTAGTAAGTAGTAATTATAGTAGTTACATGACTTCGTCTGATCTTATTGGTGGTGTTCGAATTGTGGTTACACCTACTTTCCACTAATGATGCATAATTGCATATTTATTATCTTTTATCAGTGGCTTTCATTTGTTTTGTTTGCTGGAACAGACCATTCTATAAAGCCTATTTCCTGGACTGTCTTAATTTTTCTTTTGA

Network for GWHGAAZE022429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01145.26	Band_7	8	184	1.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07192	FLOT	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.318
	SRR3591706	second leaf	1.188
	SRR3591707	mature leaf	0.223
	SRR3591708	Shoot apex	1.474
	SRR3591709	Stem	0.178
	SRR3591710	White floral bud	30.124
	SRR3591711	White flower	11.726
	SRR3591712	Green floral bud	9.079
	SRR3591713	Yellow flower	0.123
SRP173429	SRR8316895	Juvenile bud stage	9.503
	SRR8316896	Juvenile bud stage	4.369
	SRR8316897	Juvenile bud stage	0.899
	SRR8316894	Third green stage	3.938
	SRR8316900	Third green stage	4.492
	SRR8316901	Third green stage	3.410
	SRR8316898	Complete white stage	1.772
	SRR8316899	Complete white stage	32.149
	SRR8316903	Complete white stage	10.474
	SRR8316902	Silver flowering stage	1.872
	SRR8316904	Silver flowering stage	1.320
	SRR8316905	Silver flowering stage	0.087
	SRR8316906	Gold flowering stage	0.484
	SRR8316907	Gold flowering stage	0.730
	SRR8316908	Gold flowering stage	0.500
SRP132670	SRR6706286	Control	8.302
	SRR6706287	Light intensity 50%	9.160
	SRR6706288	Light intensity 20%	8.268
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.819
	CNS0095593	Slightly white alabastrum(diploid) 2	8.816
	CNS0095594	Slightly white alabastrum(diploid) 3	11.072
	CNS0095595	Whole white alabastrum(diploid) 2	14.481
	CNS0095596	Whole white alabastrum(diploid) 3	1.074
	CNS0095597	Whole white alabastrum(diploid) 4	8.581
	CNS0095598	Silvery flower (diploied) 1	14.327
	CNS0095599	Silvery flower (diploied) 2	4.984
	CNS0095600	Silvery flower (diploied) 3	17.695
	CNS0095601	Golden flower (diploid) 1	18.374
	CNS0095602	Golden flower (diploid) 2	21.014
	CNS0095603	Golden flower (diploid) 3	19.916
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.867
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.994
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.618
	CNS0095610	Silvery flower (tetraploid) 1	5.769
	CNS0095611	Silvery flower (tetraploid) 2	4.962
	CNS0095612	Silvery flower (tetraploid) 3	1.294
	CNS0095613	Golden flower (tetraploid) 1	0.832
	CNS0095614	Golden flower (tetraploid) 2	3.863
	CNS0095615	Golden flower (tetraploid) 3	0.435
CRA001975	CRR073297	Stem 1	1.893
	CRR073298	Stem 2	3.443
	CRR073299	Stem 3	3.931
	CRR073300	Leaf 1	1.688
	CRR073301	Leaf 2	2.040
	CRR073302	Leaf 3	0.950
	CRR073303	Juvenile bud 1	1.454
	CRR073304	Juvenile bud 2	0.358
	CRR073305	Juvenile bud 3	2.906
	CRR073306	Third green 1	0.213
	CRR073307	Third green 2	0.708
	CRR073308	Third green 3	1.043
	CRR073309	Second white 1	0.100
	CRR073310	Second white 2	0.965
	CRR073311	Second white 3	0.216
	CRR073312	Silver flowering 1	0.241
	CRR073313	Silver flowering 2	0.055
	CRR073314	Silver flowering 3	0.478
	CRR073315	Gold flowering 1	0.089
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.135
	CRR073319	Tawny withering 2	0.451
	CRR073320	Tawny withering 3	0.161