Gene detail

Detail information of GWHGAAZE022437

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045349.1	2.9793E-172	Lignin-forming anionic peroxidase [Theobroma cacao]
Swissprot	tr\|Q02200\|PERX_NICSY	1E-168	Lignin-forming anionic peroxidase (Precursor)
trEMBL	tr\|A0A061E8C7\|A0A061E8C7_THECC	1E-172	Lignin-forming anionic peroxidase {ECO:0000313\|EMBL:EOY01181.1}
TAIR10	AT1G14550.1	7E-120	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72529646	72530802	-
GWHAAZE00000006	mRNA	72529646	72530802	-
GWHAAZE00000006	exon	72530621	72530802	-
GWHAAZE00000006	exon	72530322	72530513	-
GWHAAZE00000006	exon	72529646	72530206	-
GWHAAZE00000006	five_prime_UTR	72530777	72530802	-
GWHAAZE00000006	CDS	72530621	72530776	-
GWHAAZE00000006	CDS	72530322	72530513	-
GWHAAZE00000006	CDS	72529646	72530206	-

Transcript Sequence
>GWHTAAZE022467 TCTTTTTCTTGTTCTTGCTTTCTAACATGCCATGTAATGCACAGTTATCTCCTTCATTTTATGATGGTACGTGTCCAAATGCATTAAATACCATTAGAACTTCTATTAGGCAATCTATTTCACGTGAACGCCGCATGGCAGCATCCCTCATTCGCCTCCATTTCCACGACTGTTTCGTCCAGGGTTGTGATGCATCAATCTTACTTGACGACGCTCCTTCCATCACAAGTGAAAAGAACGCATTGCCTAATGCAGGCTCTGTAAGTGGCTATGGACTCATAGATGCCGCCAAGTCTGAGGTGGAGAAGATTTGTCCTGGTGTTGTTTCTTGTGCTGACATAATCGCGGTAGCAGCACGTGATGCCTCTGCCTATGTTGGCGGTCCATCATGGACAGTGAAATTGGGAAGAAGAGATTCTTCAACTGCAAGTATTACAGAGGCTAATAGCGATCTTCCAAGTTTTAAAGCTGATCTCACAACACTTATTTCTAACTTCAATAACAAGGGTCTTAGCCCACGGGATATGGTTGCTTTGTCAGGGGCGCACACATTAGGGCAAGCTCAGTGCTTCACATTCCGCGATAGAATATACAGCAATGGTACAAATATCGATGCTGGATTCGCTAGCACGCGTAGACGTCGTTGCCCTGCCTCTGTTACTGAGGGAAATGGCAATTTGGCAGCGCTTGATTTGGTGACACCAAATTCATTTGACAACAACTATTTCAAGAATCTAATTCAAAGGAAGGGTCTTCTTGAATCCGACCAGATTCTCTTTAGCGGTGGATCCACGGATAGCATTGTTAGAGAATATAGCAACAACCCAACGAGATTTAGCAATGATTTTGCAGCAGCTATGATAAAAATGGGAGATATTAGGCCACTCACTGGTCAACAAGGGGTGATTAGGAGGATTTGTAGTGCTCTTAGTTAG

Network for GWHGAAZE022437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	24	266	7.50E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006979	biological_process	response to oxidative stress
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.948
	SRR3591706	second leaf	0.509
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.854
	SRR3591709	Stem	1.641
	SRR3591710	White floral bud	1.618
	SRR3591711	White flower	1.933
	SRR3591712	Green floral bud	0.720
	SRR3591713	Yellow flower	1.006
SRP173429	SRR8316895	Juvenile bud stage	8.502
	SRR8316896	Juvenile bud stage	1.872
	SRR8316897	Juvenile bud stage	6.622
	SRR8316894	Third green stage	0.133
	SRR8316900	Third green stage	0.165
	SRR8316901	Third green stage	0.705
	SRR8316898	Complete white stage	0.092
	SRR8316899	Complete white stage	0.537
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.393
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	1.182
	SRR8316907	Gold flowering stage	3.374
	SRR8316908	Gold flowering stage	4.176
SRP132670	SRR6706286	Control	0.250
	SRR6706287	Light intensity 50%	0.600
	SRR6706288	Light intensity 20%	0.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.480
	CNS0095593	Slightly white alabastrum(diploid) 2	3.625
	CNS0095594	Slightly white alabastrum(diploid) 3	2.529
	CNS0095595	Whole white alabastrum(diploid) 2	0.535
	CNS0095596	Whole white alabastrum(diploid) 3	0.030
	CNS0095597	Whole white alabastrum(diploid) 4	1.092
	CNS0095598	Silvery flower (diploied) 1	3.695
	CNS0095599	Silvery flower (diploied) 2	4.278
	CNS0095600	Silvery flower (diploied) 3	1.417
	CNS0095601	Golden flower (diploid) 1	4.205
	CNS0095602	Golden flower (diploid) 2	1.191
	CNS0095603	Golden flower (diploid) 3	1.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.109
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.131
	CNS0095613	Golden flower (tetraploid) 1	1.420
	CNS0095614	Golden flower (tetraploid) 2	0.828
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.822
	CRR073298	Stem 2	0.394
	CRR073299	Stem 3	1.696
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.164
	CRR073302	Leaf 3	0.337
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.319
	CRR073305	Juvenile bud 3	0.049
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.063
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.303
	CRR073310	Second white 2	0.357
	CRR073311	Second white 3	0.789
	CRR073312	Silver flowering 1	7.235
	CRR073313	Silver flowering 2	4.474
	CRR073314	Silver flowering 3	1.186
	CRR073315	Gold flowering 1	0.865
	CRR073316	Gold flowering 2	5.876
	CRR073317	Gold flowering 3	3.115
	CRR073318	Tawny withering 1	0.118
	CRR073319	Tawny withering 2	2.795
	CRR073320	Tawny withering 3	0.171