Gene detail

Detail information of GWHGAAZE022441

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002521867.1	1.4082E-168	Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
Swissprot	tr\|Q02200\|PERX_NICSY	8E-164	Lignin-forming anionic peroxidase (Precursor)
trEMBL	tr\|B9S798\|B9S798_RICCO	5E-169	Lignin-forming anionic peroxidase, putative {ECO:0000313\|EMBL:EEF40503.1}
TAIR10	AT1G14550.1	2E-122	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72565408	72566885	-
GWHAAZE00000006	mRNA	72565408	72566885	-
GWHAAZE00000006	exon	72566620	72566885	-
GWHAAZE00000006	exon	72566316	72566507	-
GWHAAZE00000006	exon	72565931	72566096	-
GWHAAZE00000006	exon	72565408	72565802	-
GWHAAZE00000006	five_prime_UTR	72566839	72566885	-
GWHAAZE00000006	CDS	72566620	72566838	-
GWHAAZE00000006	CDS	72566316	72566507	-
GWHAAZE00000006	CDS	72565931	72566096	-
GWHAAZE00000006	CDS	72565408	72565802	-

Transcript Sequence
>GWHTAAZE022471 TTCCCAGTCGATATTATTTGCATATATATATATTCATAAGTTTTCAAATGGATTCTCACAATTCTTTATCAACCATCACTCTTATCCTCTTTGTGATCTTTCTTTCTAATACCCTATCCAATGCACAATTATCACCTTCATTTTATGAAGGCACGTGCCCCAATGCGCTTGCCACCATCCGAACTTCAATTAGGCAGTCGATTTCACGTGAACGCCGCATGGCAGCATCCCTCATTCGTCTCCATTTCCACGATTGTTTCGTTCAGGGCTGTGATGCATCAATCTTGCTGGAAGACACTTCTTCTTTCACGGGCGAGCAGAATGCAAATCCTAATAGGGATTCTGCAAGAGGTTACGGAGTCATAGAAGCTGCCAAATCCGAGGTGGAGAGAATATGTCCTGGTGTTGTTTCCTGTGCTGACATACTCGCTGTTGCAGCTCGCGATGCTTCTGCCTATGTGGGTGGTCCATCATGGACAGTACAATTGGGAAGAAGAGATTCCACAACTGCAAGCCAGAGTGAGGCAGATAGCGATCTTCCAAGATTTAGAGATGATCTACCCACACTCATTTCCACTTTTGATCGCAAGGGTCTCAATGCGAGAGATATGGTTGCTTTGTCAGGGGCACACACATTGGGGCAAGCACAGTGCTTCACTTTCCGCGAGAGAATATACAGTAACGGAACAGACATTGATGCTGGTTTTGCTAGCACGCGTAGACGTCGTTGCCCTGCAACTAATAATGATGGAGATAGAAACTTGGCACCTCTCGATTTGGTGACACCGAATTCATTTGACAACAACTATTACAGGAACCTAATTCAAAGGAGGGGTCTTCTTCAATCGGATCAGGTACTCTTTAGTGGAGGATCGACCAACAGTATTGTTTCAGAGTATAGCGACAATCCCTCAAGATTTAGCAGTGATTTCGCGGCCGCAATGGTGAAAATGGGAAATATTAGTCCGCTTACTGGTCAAGATGGAGTGATAAGAAGGATTTGCAGTGCTCTCAACTAG

Network for GWHGAAZE022441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	45	286	2.90E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.339
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.110
	SRR3591709	Stem	0.394
	SRR3591710	White floral bud	0.577
	SRR3591711	White flower	0.239
	SRR3591712	Green floral bud	0.325
	SRR3591713	Yellow flower	4.266
SRP173429	SRR8316895	Juvenile bud stage	0.431
	SRR8316896	Juvenile bud stage	0.418
	SRR8316897	Juvenile bud stage	0.350
	SRR8316894	Third green stage	0.696
	SRR8316900	Third green stage	0.087
	SRR8316901	Third green stage	1.302
	SRR8316898	Complete white stage	0.231
	SRR8316899	Complete white stage	1.598
	SRR8316903	Complete white stage	0.625
	SRR8316902	Silver flowering stage	1.042
	SRR8316904	Silver flowering stage	3.188
	SRR8316905	Silver flowering stage	1.298
	SRR8316906	Gold flowering stage	24.799
	SRR8316907	Gold flowering stage	11.666
	SRR8316908	Gold flowering stage	56.965
SRP132670	SRR6706286	Control	1.255
	SRR6706287	Light intensity 50%	3.601
	SRR6706288	Light intensity 20%	2.783
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.809
	CNS0095593	Slightly white alabastrum(diploid) 2	2.392
	CNS0095594	Slightly white alabastrum(diploid) 3	1.575
	CNS0095595	Whole white alabastrum(diploid) 2	0.540
	CNS0095596	Whole white alabastrum(diploid) 3	0.422
	CNS0095597	Whole white alabastrum(diploid) 4	0.400
	CNS0095598	Silvery flower (diploied) 1	0.216
	CNS0095599	Silvery flower (diploied) 2	0.679
	CNS0095600	Silvery flower (diploied) 3	1.396
	CNS0095601	Golden flower (diploid) 1	3.296
	CNS0095602	Golden flower (diploid) 2	1.709
	CNS0095603	Golden flower (diploid) 3	1.740
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.021
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.383
	CNS0095611	Silvery flower (tetraploid) 2	0.042
	CNS0095612	Silvery flower (tetraploid) 3	0.780
	CNS0095613	Golden flower (tetraploid) 1	10.254
	CNS0095614	Golden flower (tetraploid) 2	6.409
	CNS0095615	Golden flower (tetraploid) 3	0.142
CRA001975	CRR073297	Stem 1	0.046
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.326
	CRR073300	Leaf 1	0.879
	CRR073301	Leaf 2	0.670
	CRR073302	Leaf 3	0.252
	CRR073303	Juvenile bud 1	1.237
	CRR073304	Juvenile bud 2	0.581
	CRR073305	Juvenile bud 3	1.337
	CRR073306	Third green 1	0.452
	CRR073307	Third green 2	0.205
	CRR073308	Third green 3	0.557
	CRR073309	Second white 1	1.701
	CRR073310	Second white 2	2.736
	CRR073311	Second white 3	2.304
	CRR073312	Silver flowering 1	44.785
	CRR073313	Silver flowering 2	31.159
	CRR073314	Silver flowering 3	20.865
	CRR073315	Gold flowering 1	0.090
	CRR073316	Gold flowering 2	0.398
	CRR073317	Gold flowering 3	1.675
	CRR073318	Tawny withering 1	7.636
	CRR073319	Tawny withering 2	10.307
	CRR073320	Tawny withering 3	10.400