Gene detail

Detail information of GWHGAAZE022447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268279.1	0	PREDICTED: zinc finger protein MAGPIE isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9ZUL3\|IDD5_ARATH	5E-116	Protein indeterminate-domain 5, chloroplastic {ECO:0000303\|PubMed:16784536} (Precursor)
trEMBL	tr\|F6HG27\|F6HG27_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51220.1}
TAIR10	AT2G02070.1	9E-74	indeterminate(ID)-domain 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72673127	72676962	-
GWHAAZE00000006	mRNA	72673127	72676962	-
GWHAAZE00000006	exon	72673127	72674276	-
GWHAAZE00000006	exon	72676185	72676643	-
GWHAAZE00000006	exon	72676805	72676962	-
GWHAAZE00000006	CDS	72676805	72676962	-
GWHAAZE00000006	CDS	72676185	72676643	-
GWHAAZE00000006	CDS	72673127	72674276	-

Transcript Sequence
>GWHTAAZE022477 ATGGCCTCATCTTCATCTACAGTTTTCTTTGGTATGGGTGAGGAAGAAAACCATAGCCAGATGAAGCAGCAACAGCATTCTTCAGCACAGACTGCATCACCGCCACCCATTCCACCTCCTCAGAAGAAAAGAAGAAATCAGCCTGGAACTCCAAGCAACGCACTGATGATATATAATTGTGATTTTGTTCTTTCTTAGCTTTCATTTTTTTTTTTTATTTATAATTTTTGGAATTTTGTTGGTATGATGATAGATCCAGATGCGGAGGTAATAGCGCTATCTCCCAAGACACTAATGGCAACAAACAGATTTGTGTGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAGAAGACAACAAAAGAAGTGAAGAGGAAGGTGTATCTGTGTCCTGAACCAACTTGCGTACACCACGACCCTTCAAGAGCTTTAGGAGACCTCACCGGCATTAAAAAACACTTCTCCAGAAAGCACGGGGAGAAGAAGTTCAAGTGCGATAAGTGCTCTAAGAAATATGCGGTCCAGTCAGACTGGAAAGCCCACTCCAAAACATGCGGCACCAGAGAACGCGACAGTTTCATCACTCACAGGGCCTTCTGCGATGCACTGGCTCAAGAAAGTGCGAGAACTCCACCCACCTTGAGTGCCATTGGCACCCACTTGTACCATAACAGCAACATGAGCTTAGACTTATCTCAAGTCAATCCCCAAATTTCCACCAATCATCAGCAACCATCGGCAAGCATACTGCAACTAGGCAATTCTCGCACTCCCCAATTCCCAAATCTCACTGGTCAGCCTATCAATTCTCCCTACCGGACCACACAAACCCTAAATCCATCCCCTTTCTTCATCCCTGATACAAACCAAACTTATCATCACGAAGAAAATCAATTACTCCCAAACAAGCAATACGATGGACTCTTACAATTCCCCGAGATCGATCAGAACAATCCAAACCACACTTCTCCCAATCCCTTCAACCTCGGCTTTGTCTTAAATAACAATAATACTGCAAGCAGTATTGGCAATAGCAACAACAATTCTAGCAATTTATCTTCTCCGAGCATGTTGCTACAAAGCCAATTCAGCAATGGGCACGGATCAAATGCCAATGAAAACCCCAACCTATTCACGGATCACATTACTTCCAATGCACCTTCTCTCTATAGCACATCAATTCAAAGCCACCCCAATGCGGCCACACACATGTCCGCCACCGCGCTTCTCCAAAAGGCTGCTCAATTGGGATCCACTTCAAGCAACAGAAGCACCTCTTTGCTTAGAAGCTTTGGTAGTTCTTCTTCTGGCAGCGCTAAATCAGACAGTCCACTCATTACTGGCAACTTTGCCAGCTTTTTTGGGGAAAATAATGATAACAGTAACAACAACAATAATAATAACTTTCAGGACCTAATGAACTCTCTTGCTGGTGGTTGCTCCTCTATATTTGGTAACACATATGGCGGGAACGAAAATGAGAACAACTTTGGAGGATATAATGGGAAGAAAAAAAACCTCGAGCAGGCGCCACCGCAGAACCACCGGACATTGAGTTTTGGCGGGTCGGATGGGTTGACTCGGGACTTTCTTGGGGTTGGAGAAATAGTGAGGAGCATGAGTAGCAGTGGAATGGAAATGAGTATGAAGTCATTGGATAGCGAAAGAAAGGCTGCGGCAAAAAGGCAAGCTTTTGGAGGCGGGAATTTTCAGTGA

Network for GWHGAAZE022447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12171.9	zf-C2H2_jaz	103	125	7.50E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.022
	SRR3591706	second leaf	38.024
	SRR3591707	mature leaf	46.876
	SRR3591708	Shoot apex	19.059
	SRR3591709	Stem	10.234
	SRR3591710	White floral bud	9.267
	SRR3591711	White flower	8.196
	SRR3591712	Green floral bud	5.759
	SRR3591713	Yellow flower	4.591
SRP173429	SRR8316895	Juvenile bud stage	7.105
	SRR8316896	Juvenile bud stage	6.215
	SRR8316897	Juvenile bud stage	2.235
	SRR8316894	Third green stage	2.961
	SRR8316900	Third green stage	6.866
	SRR8316901	Third green stage	6.549
	SRR8316898	Complete white stage	1.691
	SRR8316899	Complete white stage	17.564
	SRR8316903	Complete white stage	4.398
	SRR8316902	Silver flowering stage	1.090
	SRR8316904	Silver flowering stage	2.638
	SRR8316905	Silver flowering stage	0.373
	SRR8316906	Gold flowering stage	1.752
	SRR8316907	Gold flowering stage	2.414
	SRR8316908	Gold flowering stage	2.724
SRP132670	SRR6706286	Control	11.801
	SRR6706287	Light intensity 50%	11.359
	SRR6706288	Light intensity 20%	11.250
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.766
	CNS0095593	Slightly white alabastrum(diploid) 2	8.479
	CNS0095594	Slightly white alabastrum(diploid) 3	5.353
	CNS0095595	Whole white alabastrum(diploid) 2	8.587
	CNS0095596	Whole white alabastrum(diploid) 3	1.372
	CNS0095597	Whole white alabastrum(diploid) 4	5.143
	CNS0095598	Silvery flower (diploied) 1	16.929
	CNS0095599	Silvery flower (diploied) 2	15.217
	CNS0095600	Silvery flower (diploied) 3	10.058
	CNS0095601	Golden flower (diploid) 1	16.907
	CNS0095602	Golden flower (diploid) 2	12.488
	CNS0095603	Golden flower (diploid) 3	13.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.285
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.217
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.688
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.446
	CNS0095610	Silvery flower (tetraploid) 1	4.310
	CNS0095611	Silvery flower (tetraploid) 2	5.779
	CNS0095612	Silvery flower (tetraploid) 3	2.318
	CNS0095613	Golden flower (tetraploid) 1	2.179
	CNS0095614	Golden flower (tetraploid) 2	3.765
	CNS0095615	Golden flower (tetraploid) 3	0.800
CRA001975	CRR073297	Stem 1	15.507
	CRR073298	Stem 2	15.767
	CRR073299	Stem 3	10.385
	CRR073300	Leaf 1	12.436
	CRR073301	Leaf 2	13.901
	CRR073302	Leaf 3	7.092
	CRR073303	Juvenile bud 1	7.689
	CRR073304	Juvenile bud 2	7.094
	CRR073305	Juvenile bud 3	14.473
	CRR073306	Third green 1	2.187
	CRR073307	Third green 2	1.853
	CRR073308	Third green 3	2.551
	CRR073309	Second white 1	0.884
	CRR073310	Second white 2	3.161
	CRR073311	Second white 3	2.438
	CRR073312	Silver flowering 1	1.957
	CRR073313	Silver flowering 2	0.557
	CRR073314	Silver flowering 3	1.735
	CRR073315	Gold flowering 1	14.462
	CRR073316	Gold flowering 2	26.353
	CRR073317	Gold flowering 3	15.170
	CRR073318	Tawny withering 1	4.372
	CRR073319	Tawny withering 2	1.465
	CRR073320	Tawny withering 3	1.405