Gene detail

Detail information of GWHGAAZE022452

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAA56815.2	3.407E-124	cdc2Pnc [Pinus contorta]
COG	YP_002560205.1	3E-30	hypothetical protein MCCL_0802
Swissprot	tr\|P93101\|CDC2_OXYRB	2E-124	Cell division control protein 2 homolog
trEMBL	tr\|Q40790\|Q40790_PINCO	1E-124	Cdc2Pnc protein {ECO:0000313\|EMBL:CAA56815.2}
TAIR10	AT3G48750.1	5E-92	cell division control 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72758224	72760846	-
GWHAAZE00000006	mRNA	72758224	72760846	-
GWHAAZE00000006	exon	72758224	72758313	-
GWHAAZE00000006	exon	72758533	72758607	-
GWHAAZE00000006	exon	72758700	72758775	-
GWHAAZE00000006	exon	72758886	72759046	-
GWHAAZE00000006	exon	72759496	72759669	-
GWHAAZE00000006	exon	72760119	72760239	-
GWHAAZE00000006	exon	72760641	72760846	-
GWHAAZE00000006	CDS	72760641	72760846	-
GWHAAZE00000006	CDS	72760119	72760239	-
GWHAAZE00000006	CDS	72759496	72759669	-
GWHAAZE00000006	CDS	72758886	72759046	-
GWHAAZE00000006	CDS	72758700	72758775	-
GWHAAZE00000006	CDS	72758533	72758607	-
GWHAAZE00000006	CDS	72758224	72758313	-

Transcript Sequence
>GWHTAAZE022482 ATGGAAAAGTTAGAAGGCAGCTATGAGCCAATTGAGAGGATTGGAGAAGGCGGCTTTAGTGCAGTTTACAAGTGTCGTAACAGTGTGACAAGGAAGATTGTAGCTGTGAAGAGGATTTTCTTTGTAGATGAAAATGAAGGTGTACCAAGCTCAGTAATAAGAGAAATTTCTCTTTTGAAAGAATTAGATCATCCCAACATTATCAGGTTATTGGATGTACTTAATGCTGGAGAAGGTGTAGATCTTGTTTTTGAATGTCTCGACTGTGACCTGAAGAAATTTATTGATTCTTATCCACGGGTTGCCAAGGATCCACTCCTAATAAAAAGCTTCCTGCTCCAGATTCTTCGTGGAGTCTCCTACTGCCATTCTCATAAAATTCTTCATCGAGATCTGAAACCTCAGAATTTGCTTGTCAATATCAGTAGAAAAGAAGTGAAGGTTGCTGATTTTGGGTTAGCTAGGGCATTTGGTGTTCCTCCCAGGACATATACTGACAACGTTGCAACTCTAGCATACAGGGCGCCTGAACTTCTACTTGGCTTTAAATACTCTTCTCCAATTGATATTTGGTCAGTTGGATGTATATTTGCTGAGATGGTGACCCAGCAGCCGCTGTTCAGTGGAACTTGTGACACTAGTATATTGATTCAAATTTTCAGCATGTTAGGTGTTCCAAATGAGGAGAACTGGCCTGGAGTAACTTCATTAAACATCTTTATTTCTAAAATGTTCATGTTCCCCACTGAGATCAGACAGAACCTTGCTGATGTTGTTACCGGTCTTGAACCTGCTGGAATGGATCTTCTATCTAGAATGCTCTGCTTGAATCCTAGTAGAAGAATCACGGCTCATGATGCACTTGAGCATCCATATTTCAGAAATGTTGCAGCTAATCCTTGA

Network for GWHGAAZE022452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	8	293	5.70E-71

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
K02206	CDK2	FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		Cell cycle	map04110
		Oocyte meiosis	map04114
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.588
	SRR3591707	mature leaf	0.508
	SRR3591708	Shoot apex	0.368
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.105
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.479
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	11.114
	SRR8316896	Juvenile bud stage	18.520
	SRR8316897	Juvenile bud stage	4.620
	SRR8316894	Third green stage	3.580
	SRR8316900	Third green stage	5.385
	SRR8316901	Third green stage	5.255
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.039
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.041
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.051
SRP132670	SRR6706286	Control	0.604
	SRR6706287	Light intensity 50%	0.620
	SRR6706288	Light intensity 20%	0.419
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.152
	CNS0095593	Slightly white alabastrum(diploid) 2	7.072
	CNS0095594	Slightly white alabastrum(diploid) 3	14.052
	CNS0095595	Whole white alabastrum(diploid) 2	7.728
	CNS0095596	Whole white alabastrum(diploid) 3	9.320
	CNS0095597	Whole white alabastrum(diploid) 4	9.299
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.500
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.107
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.027
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.409
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.554
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.046
	CNS0095612	Silvery flower (tetraploid) 3	0.150
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.875
	CRR073298	Stem 2	2.785
	CRR073299	Stem 3	1.997
	CRR073300	Leaf 1	1.157
	CRR073301	Leaf 2	0.957
	CRR073302	Leaf 3	0.707
	CRR073303	Juvenile bud 1	0.447
	CRR073304	Juvenile bud 2	0.432
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.089
	CRR073308	Third green 3	0.087
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.122
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.202
	CRR073315	Gold flowering 1	0.670
	CRR073316	Gold flowering 2	0.035
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.006
	CRR073319	Tawny withering 2	0.053
	CRR073320	Tawny withering 3	0.011