Gene detail

Detail information of GWHGAAZE022454

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG21088.1	0	Glutamate decarboxylase [Gossypium arboreum]
COG	YP_007243829.1	4E-165	glutamate decarboxylase
Swissprot	tr\|Q9ZPS3\|DCE4_ARATH	0	Glutamate decarboxylase 4
trEMBL	tr\|A0A059D6B5\|A0A059D6B5_EUCGR	0	Glutamate decarboxylase {ECO:0000256\|RuleBase:RU361171}
TAIR10	AT2G02010.1	0	glutamate decarboxylase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72784594	72787273	+
GWHAAZE00000006	mRNA	72784594	72787273	+
GWHAAZE00000006	exon	72784594	72784679	+
GWHAAZE00000006	exon	72784765	72785055	+
GWHAAZE00000006	exon	72785424	72785649	+
GWHAAZE00000006	exon	72785783	72785997	+
GWHAAZE00000006	exon	72786094	72786347	+
GWHAAZE00000006	exon	72786454	72786506	+
GWHAAZE00000006	exon	72786767	72787273	+
GWHAAZE00000006	CDS	72784594	72784679	+
GWHAAZE00000006	CDS	72784765	72785055	+
GWHAAZE00000006	CDS	72785424	72785649	+
GWHAAZE00000006	CDS	72785783	72785997	+
GWHAAZE00000006	CDS	72786094	72786347	+
GWHAAZE00000006	CDS	72786454	72786506	+
GWHAAZE00000006	CDS	72786767	72787237	+
GWHAAZE00000006	three_prime_UTR	72787238	72787273	+

Transcript Sequence
>GWHTAAZE022484 ATGGTTCTCTCAAAAACAGCCTCGGAGTCAGATGTATCTGTTCACTCCACCTTTGCTTCTCGCTATGTACGAACTTCACTTCCTAGGTTCAAGATGCCAGAGAATTGTATACCAAAGGAAGCAGCGTACCAGATCATAAATGATGAGCTTATGCTTGATGGGAACCCAAGGTTGAACTTGGCTTCTTTTGTGACCACGTGGATGGAGCCAGAGTGCGATAAGCTTATGATGGCCGCCATTAACAAGAACTATGTCGACATGGACGAATACCCCGTCACTACTGAGCTTCAGGCACCCCTCTCTCTCTCCAATCTTTTATTATTCTTGAGACATCGACATTGTGAACATATAAATATATATATAGGCTATGGACTATGTTTCTGGTGTATCAATTTTGTGCAGAACCGATGTGTGAACATGATAGCGCATTTGTTCAATGCTCCACTGGGAGACTCAGAGACTGCAGTGGGTGTGGGAACAGTGGGTTCATCCGAGGCCATAATGCTCGCTGGCCTTGCTTTCAAGAGAAAATGGCAAAACAAGCGCAAAGCCGAGGGCAAACCATGTGACAAGCCCAACATAGTCACCGGAGCCAATGTTCAGGTTTGCTGGGAGAAGTTTGCAAATTACTTTGAGGTGGAACTAAAGGAAGTTAAGCTTAGGGAAGGTTACTATGTGATGGACCCTGTTAAAGCTGTGGAACTTGTCGATGAAAACACCATTTGTGTCGCTGCAATTTTGGGTTCAACCCTAAATGGCGAGTTTGAAGACGTCAAGCTCTTGAACGATCTTCTCCTTGAAAAGAACAAGCAAACTGGATGGGATACACCAATTCATGTGGATGCGGCGAGTGGTGGGTTCATAGCACCATTCGTATATCCGGAGCTTGAGTGGGATTTTAGGCTTCCATTGGTGAAGAGCATCAATGTTAGTGGGCACAAATATGGACTTGTATATGCTGGAATTGGTTGGGTTATTTGGAGGACCAAAGAGGAGTTACCTGAAGAACTTATATTCCATATCAATTATCTTGGTGCTGATCAACCTACCTTCACCTTGAATTTCTCTAAAGGTTCAAGTCAAGTCATTGCTCAGTATTATCAACTTATCCGCTTGGGTTTTGAGGGATACCAAAATGTGATGGAGAATTGTCGTGAAAACGCAATAGTGCTAAAACAAGGGCTGGAGCAGACTGGGCGATTCAACATTGTGTCCAAGGACAAGGGTGTCCCTTTAGTGGCCTTCTCTCTCAAGGACAACCTCAGTTACACCGAGTTCGATGTTTCAGAAATGTTGCGTAGGTTTGGGTGGATTGTACCAGCTTACACCATGCCCGCTGATGCACAACACGTGACTGTCCTACGTGTTGTGATTAGGGAAGATTTTTCTCGTACGCTTGCAGAACGTCTTGTCCTCGACATCACCAAGGTTCTCCATGATTTGGATGCAGTGGCTGCAAAAGTGAGCACAAATATGGCTATTAGTAATGGTGAAAAGAATGCGAAAAATGGGAAGAAAACAGCAATGGAGACGCAGAGGGAAATTACTGATGTTTGGAAGAAATTTGTCCAGGCTAGGAAAACTAAAATTTGTTAAGAGAATTCATATATTGTTGGCTATTAACTTTTTCAA

Network for GWHGAAZE022454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	33	98	4.80E-11
PF00282.20	Pyridoxal_deC	133	418	1.60E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01580	E4.1.1.15, gadB, gadA, GAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Butanoate metabolism	map00650
		Alanine, aspartate and glutamate metabolism	map00250
		beta-Alanine metabolism	map00410
		Taurine and hypotaurine metabolism	map00430
		Quorum sensing	map02024
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0006536	biological_process	glutamate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0004351	molecular_function	glutamate decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.986
	SRR3591706	second leaf	0.060
	SRR3591707	mature leaf	0.092
	SRR3591708	Shoot apex	0.117
	SRR3591709	Stem	0.425
	SRR3591710	White floral bud	0.821
	SRR3591711	White flower	5.622
	SRR3591712	Green floral bud	0.095
	SRR3591713	Yellow flower	8.763
SRP173429	SRR8316895	Juvenile bud stage	1.030
	SRR8316896	Juvenile bud stage	7.037
	SRR8316897	Juvenile bud stage	0.215
	SRR8316894	Third green stage	0.924
	SRR8316900	Third green stage	0.395
	SRR8316901	Third green stage	0.974
	SRR8316898	Complete white stage	0.221
	SRR8316899	Complete white stage	0.677
	SRR8316903	Complete white stage	0.282
	SRR8316902	Silver flowering stage	2.036
	SRR8316904	Silver flowering stage	3.278
	SRR8316905	Silver flowering stage	1.303
	SRR8316906	Gold flowering stage	28.308
	SRR8316907	Gold flowering stage	13.407
	SRR8316908	Gold flowering stage	60.069
SRP132670	SRR6706286	Control	0.372
	SRR6706287	Light intensity 50%	0.341
	SRR6706288	Light intensity 20%	0.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.001
	CNS0095593	Slightly white alabastrum(diploid) 2	1.302
	CNS0095594	Slightly white alabastrum(diploid) 3	2.171
	CNS0095595	Whole white alabastrum(diploid) 2	1.873
	CNS0095596	Whole white alabastrum(diploid) 3	0.765
	CNS0095597	Whole white alabastrum(diploid) 4	0.955
	CNS0095598	Silvery flower (diploied) 1	0.816
	CNS0095599	Silvery flower (diploied) 2	0.927
	CNS0095600	Silvery flower (diploied) 3	1.340
	CNS0095601	Golden flower (diploid) 1	1.314
	CNS0095602	Golden flower (diploid) 2	4.231
	CNS0095603	Golden flower (diploid) 3	3.634
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.263
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.076
	CNS0095610	Silvery flower (tetraploid) 1	4.425
	CNS0095611	Silvery flower (tetraploid) 2	0.957
	CNS0095612	Silvery flower (tetraploid) 3	3.270
	CNS0095613	Golden flower (tetraploid) 1	16.736
	CNS0095614	Golden flower (tetraploid) 2	7.937
	CNS0095615	Golden flower (tetraploid) 3	2.504
CRA001975	CRR073297	Stem 1	2.058
	CRR073298	Stem 2	0.955
	CRR073299	Stem 3	1.070
	CRR073300	Leaf 1	0.343
	CRR073301	Leaf 2	0.420
	CRR073302	Leaf 3	0.705
	CRR073303	Juvenile bud 1	0.136
	CRR073304	Juvenile bud 2	0.157
	CRR073305	Juvenile bud 3	0.157
	CRR073306	Third green 1	0.375
	CRR073307	Third green 2	0.138
	CRR073308	Third green 3	0.467
	CRR073309	Second white 1	3.844
	CRR073310	Second white 2	6.915
	CRR073311	Second white 3	9.042
	CRR073312	Silver flowering 1	42.451
	CRR073313	Silver flowering 2	46.903
	CRR073314	Silver flowering 3	37.120
	CRR073315	Gold flowering 1	0.112
	CRR073316	Gold flowering 2	0.597
	CRR073317	Gold flowering 3	0.917
	CRR073318	Tawny withering 1	18.744
	CRR073319	Tawny withering 2	34.294
	CRR073320	Tawny withering 3	15.147