Gene detail

Detail information of GWHGAAZE022461

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045415.1	3.5704E-152	NAD(P)-linked oxidoreductase superfamily protein, putative [Theobroma cacao]
COG	YP_007469167.1	5E-62	aldo/keto reductase, diketogulonate reductase
Swissprot	tr\|O49133\|GALUR_FRAAN	8E-143	D-galacturonate reductase
trEMBL	tr\|A0A061EA55\|A0A061EA55_THECC	1E-152	NAD(P)-linked oxidoreductase superfamily protein, putative {ECO:0000313\|EMBL:EOY01247.1}
TAIR10	AT1G59960.1	3E-90	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72963564	72966026	+
GWHAAZE00000006	mRNA	72963564	72966026	+
GWHAAZE00000006	exon	72963564	72963889	+
GWHAAZE00000006	exon	72964846	72965089	+
GWHAAZE00000006	exon	72965243	72965422	+
GWHAAZE00000006	exon	72965656	72966026	+
GWHAAZE00000006	CDS	72963564	72963889	+
GWHAAZE00000006	CDS	72964846	72965089	+
GWHAAZE00000006	CDS	72965243	72965422	+
GWHAAZE00000006	CDS	72965656	72965868	+
GWHAAZE00000006	three_prime_UTR	72965869	72966026	+

Transcript Sequence
>GWHTAAZE022491 ATGGCAGTATCAACCATACCAACAGTAACATTAAGCTCGTTAAATGGGCCCCGAGCGATGCCGATCATAGCCATGGGCAGTGGATCAACAGGACCGGATGACACGGAAGCCACCAAGTCAGCCATCATCGAAGCCATCAAGGTGGGGTACCGCCACTTTGACACGGCGGCTCTCTACGGGACTGAGCCGGCTATTGGTTTAGCTATAGCTGAAGCACTTAGGCTCGGTCTGGTCAAATCCAGAGATGAGCTCTTCATCACTACCAAGCTCTGGTGCAACTCTACCCAAGCTGATCTTGTTTTACCAGCCATCAGAAAGAGCCTCGAGAATTTAGGTTTGGAGTATGTGGACCTTTATCTGATACATTGGCCATTAAGGTTAAAGCAAGAGGTATTAGAGGTCCCAGTCCCAAAGGAATGCATTTTTCCAATTGAGATAAGGTCTGTCTGGAAAAGTATGGAGGAGTGTCAAAATCTCGGCCTCACCAAAGCCATTGGCGTTAGTAATTTCTCTCCAAGGAGACTCGACGAAATCCTTTCCTTTGCCAAAATCCCTCCGGCTGTTAATCAGGTGGAGATGAACCCACTTTGGCAGCACAAAGAGCTGAGGGACTATTGCAAGGCAAAGAACATACAACTAAGTGCTTACTCCCCCTTGGGAGCGGCGGGCACTTCCTGGGGTGACAACCGAGTAATGGACTGTTCTATTCTCCAAGACATTGCCAAGGCTAAAGGCAAAACTACTGCCCAGATTTCTCTGAGATGGTTACACGAGCAAGGGGTGAATATTATAGCAAAGAGCTTCAACAAGGAGAGGATGAGGCAGAATCTGGATATCTTGGACTGGTCGTTGAGCGAGGAAGAGTGTAATACGATTGCTAAGATTCCCCAGCGCAAAGGTGTCTATCTTGGGGCTCTTGCAGAGCCGTGTGATATTATTGCTGAAATAGATGCAGAGATATGATGATATGCATGCGACTTTAATTACTATATATGTTTAAGATCATAATATTTTCTTATATATGAATAAAACTCCTTTAATTCAAGTTTCCCATATATTAGAGAGTAAAAATTGTTATATGCATACAAATTAAAGGTTTAGACCCAACCCACTGTTTCCAC

Network for GWHGAAZE022461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	33	295	1.30E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19642	GALUR	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.556
	SRR3591708	Shoot apex	0.094
	SRR3591709	Stem	1.488
	SRR3591710	White floral bud	6.658
	SRR3591711	White flower	11.969
	SRR3591712	Green floral bud	3.154
	SRR3591713	Yellow flower	126.239
SRP173429	SRR8316895	Juvenile bud stage	1.893
	SRR8316896	Juvenile bud stage	4.316
	SRR8316897	Juvenile bud stage	1.460
	SRR8316894	Third green stage	0.492
	SRR8316900	Third green stage	4.108
	SRR8316901	Third green stage	4.356
	SRR8316898	Complete white stage	9.307
	SRR8316899	Complete white stage	14.211
	SRR8316903	Complete white stage	11.604
	SRR8316902	Silver flowering stage	3.298
	SRR8316904	Silver flowering stage	5.935
	SRR8316905	Silver flowering stage	2.016
	SRR8316906	Gold flowering stage	13.973
	SRR8316907	Gold flowering stage	24.064
	SRR8316908	Gold flowering stage	19.840
SRP132670	SRR6706286	Control	7.021
	SRR6706287	Light intensity 50%	3.819
	SRR6706288	Light intensity 20%	3.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.602
	CNS0095593	Slightly white alabastrum(diploid) 2	4.568
	CNS0095594	Slightly white alabastrum(diploid) 3	9.531
	CNS0095595	Whole white alabastrum(diploid) 2	6.087
	CNS0095596	Whole white alabastrum(diploid) 3	4.920
	CNS0095597	Whole white alabastrum(diploid) 4	8.166
	CNS0095598	Silvery flower (diploied) 1	24.044
	CNS0095599	Silvery flower (diploied) 2	22.916
	CNS0095600	Silvery flower (diploied) 3	26.256
	CNS0095601	Golden flower (diploid) 1	16.445
	CNS0095602	Golden flower (diploid) 2	84.056
	CNS0095603	Golden flower (diploid) 3	86.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.335
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.292
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.222
	CNS0095610	Silvery flower (tetraploid) 1	36.492
	CNS0095611	Silvery flower (tetraploid) 2	38.924
	CNS0095612	Silvery flower (tetraploid) 3	36.535
	CNS0095613	Golden flower (tetraploid) 1	163.630
	CNS0095614	Golden flower (tetraploid) 2	122.307
	CNS0095615	Golden flower (tetraploid) 3	57.449
CRA001975	CRR073297	Stem 1	0.553
	CRR073298	Stem 2	1.521
	CRR073299	Stem 3	0.742
	CRR073300	Leaf 1	2.273
	CRR073301	Leaf 2	1.361
	CRR073302	Leaf 3	1.991
	CRR073303	Juvenile bud 1	1.216
	CRR073304	Juvenile bud 2	1.740
	CRR073305	Juvenile bud 3	2.712
	CRR073306	Third green 1	1.067
	CRR073307	Third green 2	1.711
	CRR073308	Third green 3	1.351
	CRR073309	Second white 1	2.186
	CRR073310	Second white 2	2.296
	CRR073311	Second white 3	3.827
	CRR073312	Silver flowering 1	7.979
	CRR073313	Silver flowering 2	8.373
	CRR073314	Silver flowering 3	18.109
	CRR073315	Gold flowering 1	1.616
	CRR073316	Gold flowering 2	1.506
	CRR073317	Gold flowering 3	3.648
	CRR073318	Tawny withering 1	55.540
	CRR073319	Tawny withering 2	51.507
	CRR073320	Tawny withering 3	25.591