Detail information of GWHGAAZE022467


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05465.15.3504E-109unnamed protein product [Coffea canephora]
Swissprottr|Q9C9X7|IDD14_ARATH1E-98Protein indeterminate-domain 14 {ECO:0000303|PubMed:16784536}
trEMBLtr|A0A068UA81|A0A068UA81_COFCA2E-109Coffea canephora DH200=94 genomic scaffold, scaffold_16 {ECO:0000313|EMBL:CDP05465.1}
TAIR10AT1G68130.11E-80indeterminate(ID)-domain 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7306153673062217-
GWHAAZE00000006mRNA7306153673062217-
GWHAAZE00000006exon7306210373062217-
GWHAAZE00000006exon7306153673061978-
GWHAAZE00000006CDS7306210373062217-
GWHAAZE00000006CDS7306153673061978-
Transcript Sequence

Network for GWHGAAZE022467

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00096.27zf-C2H256780.0013
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE022467.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.535Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.499
SRR3591706second leaf4.984
SRR3591707mature leaf3.563
SRR3591708Shoot apex18.062
SRR3591709Stem33.054
SRR3591710White floral bud18.216
SRR3591711White flower18.322
SRR3591712Green floral bud11.471
SRR3591713Yellow flower3.556
SRP173429 SRR8316895Juvenile bud stage 3.965
SRR8316896Juvenile bud stage 2.343
SRR8316897Juvenile bud stage 0.727
SRR8316894Third green stage 3.161
SRR8316900Third green stage 7.391
SRR8316901Third green stage 5.175
SRR8316898Complete white stage 4.097
SRR8316899Complete white stage 15.979
SRR8316903Complete white stage 8.241
SRR8316902Silver flowering stage1.381
SRR8316904Silver flowering stage1.477
SRR8316905Silver flowering stage0.691
SRR8316906Gold flowering stage 2.104
SRR8316907Gold flowering stage 1.044
SRR8316908Gold flowering stage 1.824
SRP132670SRR6706286Control12.994
SRR6706287Light intensity 50%12.638
SRR6706288Light intensity 20%13.288
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.797
CNS0095593Slightly white alabastrum(diploid) 25.542
CNS0095594Slightly white alabastrum(diploid) 32.959
CNS0095595Whole white alabastrum(diploid) 26.536
CNS0095596Whole white alabastrum(diploid) 34.202
CNS0095597Whole white alabastrum(diploid) 45.961
CNS0095598Silvery flower (diploied) 123.371
CNS0095599Silvery flower (diploied) 29.523
CNS0095600Silvery flower (diploied) 35.035
CNS0095601Golden flower (diploid) 17.539
CNS0095602Golden flower (diploid) 27.169
CNS0095603Golden flower (diploid) 38.303
CNS0095604Slightly white alabastrum(tetraploid) 110.027
CNS0095605Slightly white alabastrum(tetraploid) 27.330
CNS0095606Slightly white alabastrum(tetraploid) 324.297
CNS0095607Whole white alabastrum(tetraploid) 17.961
CNS0095608Whole white alabastrum(tetraploid) 23.449
CNS0095609Whole white alabastrum(tetraploid) 34.899
CNS0095610Silvery flower (tetraploid) 13.732
CNS0095611Silvery flower (tetraploid) 27.712
CNS0095612Silvery flower (tetraploid) 33.444
CNS0095613Golden flower (tetraploid) 12.444
CNS0095614Golden flower (tetraploid) 22.421
CNS0095615Golden flower (tetraploid) 31.470
CRA001975CRR073297Stem 117.204
CRR073298Stem 218.057
CRR073299Stem 315.600
CRR073300Leaf 115.137
CRR073301Leaf 218.419
CRR073302Leaf 314.606
CRR073303Juvenile bud 117.412
CRR073304Juvenile bud 29.593
CRR073305Juvenile bud 319.408
CRR073306Third green 12.331
CRR073307Third green 24.946
CRR073308Third green 38.620
CRR073309Second white 11.207
CRR073310Second white 21.003
CRR073311Second white 30.365
CRR073312Silver flowering 10.307
CRR073313Silver flowering 20.893
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.120
CRR073316Gold flowering 25.108
CRR073317Gold flowering 32.579
CRR073318Tawny withering 16.272
CRR073319Tawny withering 24.097
CRR073320Tawny withering 36.343