Detail information of GWHGAAZE022471


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19617.10unnamed protein product [Coffea canephora]
Swissprottr|F4IRR2|SAD2_ARATH0Importin beta-like SAD2 {ECO:0000305}
trEMBLtr|A0A068VG83|A0A068VG83_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_569 {ECO:0000313|EMBL:CDP19617.1}
TAIR10AT2G31660.10ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7310048073110327-
GWHAAZE00000006mRNA7310048073110327-
GWHAAZE00000006exon7310048073100640-
GWHAAZE00000006exon7310075273100878-
GWHAAZE00000006exon7310113573101295-
GWHAAZE00000006exon7310144973101588-
GWHAAZE00000006exon7310167273101811-
GWHAAZE00000006exon7310234273102521-
GWHAAZE00000006exon7310263673102739-
GWHAAZE00000006exon7310308473103215-
GWHAAZE00000006exon7310428673104484-
GWHAAZE00000006exon7310460773104725-
GWHAAZE00000006exon7310481973104860-
GWHAAZE00000006exon7310494973105108-
GWHAAZE00000006exon7310650973106689-
GWHAAZE00000006exon7310679273106915-
GWHAAZE00000006exon7310702273107167-
GWHAAZE00000006exon7310738273107555-
GWHAAZE00000006exon7310764073107824-
GWHAAZE00000006exon7310802973108191-
GWHAAZE00000006exon7310862273108771-
GWHAAZE00000006exon7310952873109615-
GWHAAZE00000006exon7310971273109847-
GWHAAZE00000006exon7311023873110327-
GWHAAZE00000006CDS7311023873110327-
GWHAAZE00000006CDS7310971273109847-
GWHAAZE00000006CDS7310952873109615-
GWHAAZE00000006CDS7310862273108771-
GWHAAZE00000006CDS7310802973108191-
GWHAAZE00000006CDS7310764073107824-
GWHAAZE00000006CDS7310738273107555-
GWHAAZE00000006CDS7310702273107167-
GWHAAZE00000006CDS7310679273106915-
GWHAAZE00000006CDS7310650973106689-
GWHAAZE00000006CDS7310494973105108-
GWHAAZE00000006CDS7310481973104860-
GWHAAZE00000006CDS7310460773104725-
GWHAAZE00000006CDS7310428673104484-
GWHAAZE00000006CDS7310308473103215-
GWHAAZE00000006CDS7310263673102739-
GWHAAZE00000006CDS7310234273102521-
GWHAAZE00000006CDS7310167273101811-
GWHAAZE00000006CDS7310144973101588-
GWHAAZE00000006CDS7310113573101295-
GWHAAZE00000006CDS7310075273100878-
GWHAAZE00000006CDS7310048073100640-
Transcript Sequence

Network for GWHGAAZE022471

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03810.20IBN_N24996.20E-19
PF08506.11Cse11534507.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20223IPO7, RANBP7 MAPK signaling pathway - fly map04013

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0008536molecular_functionRan GTPase binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.184
SRR3591706second leaf17.394
SRR3591707mature leaf19.936
SRR3591708Shoot apex24.185
SRR3591709Stem29.764
SRR3591710White floral bud52.987
SRR3591711White flower31.172
SRR3591712Green floral bud67.567
SRR3591713Yellow flower25.120
SRP173429 SRR8316895Juvenile bud stage 26.652
SRR8316896Juvenile bud stage 32.735
SRR8316897Juvenile bud stage 16.057
SRR8316894Third green stage 22.119
SRR8316900Third green stage 76.575
SRR8316901Third green stage 63.755
SRR8316898Complete white stage 18.669
SRR8316899Complete white stage 88.380
SRR8316903Complete white stage 37.907
SRR8316902Silver flowering stage13.772
SRR8316904Silver flowering stage24.781
SRR8316905Silver flowering stage10.550
SRR8316906Gold flowering stage 26.789
SRR8316907Gold flowering stage 23.942
SRR8316908Gold flowering stage 27.378
SRP132670SRR6706286Control57.374
SRR6706287Light intensity 50%68.128
SRR6706288Light intensity 20%79.271
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.808
CNS0095593Slightly white alabastrum(diploid) 221.962
CNS0095594Slightly white alabastrum(diploid) 315.420
CNS0095595Whole white alabastrum(diploid) 221.012
CNS0095596Whole white alabastrum(diploid) 323.014
CNS0095597Whole white alabastrum(diploid) 422.888
CNS0095598Silvery flower (diploied) 116.608
CNS0095599Silvery flower (diploied) 211.574
CNS0095600Silvery flower (diploied) 339.616
CNS0095601Golden flower (diploid) 110.551
CNS0095602Golden flower (diploid) 229.978
CNS0095603Golden flower (diploid) 328.428
CNS0095604Slightly white alabastrum(tetraploid) 131.291
CNS0095605Slightly white alabastrum(tetraploid) 221.528
CNS0095606Slightly white alabastrum(tetraploid) 383.577
CNS0095607Whole white alabastrum(tetraploid) 113.415
CNS0095608Whole white alabastrum(tetraploid) 215.475
CNS0095609Whole white alabastrum(tetraploid) 375.178
CNS0095610Silvery flower (tetraploid) 134.834
CNS0095611Silvery flower (tetraploid) 234.987
CNS0095612Silvery flower (tetraploid) 331.153
CNS0095613Golden flower (tetraploid) 111.895
CNS0095614Golden flower (tetraploid) 226.715
CNS0095615Golden flower (tetraploid) 323.998
CRA001975CRR073297Stem 158.578
CRR073298Stem 257.634
CRR073299Stem 349.141
CRR073300Leaf 1117.562
CRR073301Leaf 292.369
CRR073302Leaf 384.892
CRR073303Juvenile bud 1136.044
CRR073304Juvenile bud 292.097
CRR073305Juvenile bud 3137.896
CRR073306Third green 126.224
CRR073307Third green 223.172
CRR073308Third green 328.317
CRR073309Second white 116.364
CRR073310Second white 216.565
CRR073311Second white 316.743
CRR073312Silver flowering 111.337
CRR073313Silver flowering 211.468
CRR073314Silver flowering 313.026
CRR073315Gold flowering 114.455
CRR073316Gold flowering 224.985
CRR073317Gold flowering 314.549
CRR073318Tawny withering 137.168
CRR073319Tawny withering 226.399
CRR073320Tawny withering 339.508