Gene detail

Detail information of GWHGAAZE022476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010241716.1	4.257E-160	PREDICTED: purple acid phosphatase 17-like [Nelumbo nucifera]
COG	YP_004284477.1	2E-46	putative phosphatase
Swissprot	tr\|Q8VYU7\|PPA4_ARATH	8E-143	Purple acid phosphatase 4 (Precursor)
trEMBL	tr\|I1KQM7\|I1KQM7_SOYBN	3E-156	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G06090.1}
TAIR10	AT1G25230.1	3E-115	Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73166152	73168656	+
GWHAAZE00000006	mRNA	73166152	73168656	+
GWHAAZE00000006	exon	73166152	73166346	+
GWHAAZE00000006	exon	73167022	73167178	+
GWHAAZE00000006	exon	73167264	73167371	+
GWHAAZE00000006	exon	73167472	73167599	+
GWHAAZE00000006	exon	73167708	73167836	+
GWHAAZE00000006	exon	73168056	73168123	+
GWHAAZE00000006	exon	73168222	73168656	+
GWHAAZE00000006	CDS	73166152	73166346	+
GWHAAZE00000006	CDS	73167022	73167178	+
GWHAAZE00000006	CDS	73167264	73167371	+
GWHAAZE00000006	CDS	73167472	73167599	+
GWHAAZE00000006	CDS	73167708	73167836	+
GWHAAZE00000006	CDS	73168056	73168123	+
GWHAAZE00000006	CDS	73168222	73168456	+
GWHAAZE00000006	three_prime_UTR	73168457	73168656	+

Transcript Sequence
>GWHTAAZE022506 ATGATTTGTTTTAATGGAAGAAGCTGGTTAATGTACCTTCGATTGAGTCTTATTTTATGCACATTTTTGGTCCCAAGTTTTGGTGAGTTCGTCAAGTTTCATCACCAACCAAAGGCAGATGGGTCTCTTAGCTTTTTGGTCATTGGAGATTGGGGCAGAAGAGGGTTTTACAACCAATCTGAAGTTGCTACTCAGATGGGAAAAGTTGGAGAGAAACTAGATATAGATTTTGTAATTTCCACCGGAGATAATTTTTATGATGATGGGCTAAAGGGTGTAGATGACCCTGCATTTGAGGAGTCGTTTAAGAACATATACACTGCTAAGAGCCTTCAAAAGCCTTGGTACAGTGTTTTGGGCAATCATGATTACAGAGGTGATGTAGAGGCACAATTAAGCCCTGTTCTTAGGCAGATTGACAGCAGATGGCTTTGCTTGAGATCTTTTGTTCTTCATGCAGAAATTGTGGAATTCTTCTTTGTGGACACTACTCCGTTTGTTGATCTTTACTTCACTGACCCAAAAGACCATGTATACGATTGGGAAGGGATTAATCCTCGAGGAGCGTACCTTGCTACCCTTTTAGGGGATTTGGCAAAGGCATTGAACGAGTCCACGGCTAAGTGGAAGATTGTAGTCGGCCACCATGCTATTAGAAGTACCGGTCACCATGGTGATACTCACGAACTTGTCGTGCAACTCCTCCCTATACTGAAGGCTTACAATGTGGATTTCTACATGAACGGGCACGACCACAGCCTTGAACACATTAGTTGCAGGAATAGTTCGATCCAATTTTTAACTAGCGGCGCTGGTTCTAAGGCGTGGATGACAGATTACAAGAAGCACTATCAATGTGATGTGAAATACTTCCATCTTGGACAAGGTTTCATGTCAGTGGAGCTTACAAAGTATGATGCCAAAATTGTGTTTTATGATGTTTTTGGAAAGGTTGGGCATCAATTGACTGCCTCTAAATCTAAGCAGCAGCAGCAGCAGCAGCTTCATTCTTCCACTTAAATATTTGCTTAAAACCACAGCTAAATATATATTTTCTATTAAATGTATATATAGCTATTGCAGCTTTGCACTATTTCCACAGGGTTAATTTTGTGGGACGATGATGGGGTGATTTGTAGATTAAATTAGCAGCAGAGAGTGTAAAATTCTTAAGTTATATATGTGATTTAATTCCTTCTATGTTCATATTGTGAATGTAT

Network for GWHGAAZE022476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	44	253	4.90E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14379	ACP5	Metabolic pathways	map01100
		Riboflavin metabolism	map00740
		Lysosome	map04142
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity
GO:0003993	molecular_function	acid phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.077
	SRR3591706	second leaf	0.460
	SRR3591707	mature leaf	0.168
	SRR3591708	Shoot apex	0.517
	SRR3591709	Stem	0.467
	SRR3591710	White floral bud	52.665
	SRR3591711	White flower	7.400
	SRR3591712	Green floral bud	1.504
	SRR3591713	Yellow flower	7.583
SRP173429	SRR8316895	Juvenile bud stage	1.738
	SRR8316896	Juvenile bud stage	0.542
	SRR8316897	Juvenile bud stage	0.055
	SRR8316894	Third green stage	0.397
	SRR8316900	Third green stage	1.727
	SRR8316901	Third green stage	1.404
	SRR8316898	Complete white stage	2.680
	SRR8316899	Complete white stage	1.914
	SRR8316903	Complete white stage	3.545
	SRR8316902	Silver flowering stage	2.658
	SRR8316904	Silver flowering stage	5.749
	SRR8316905	Silver flowering stage	2.404
	SRR8316906	Gold flowering stage	3.025
	SRR8316907	Gold flowering stage	5.386
	SRR8316908	Gold flowering stage	3.275
SRP132670	SRR6706286	Control	1.513
	SRR6706287	Light intensity 50%	3.029
	SRR6706288	Light intensity 20%	1.129
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.957
	CNS0095593	Slightly white alabastrum(diploid) 2	0.295
	CNS0095594	Slightly white alabastrum(diploid) 3	0.490
	CNS0095595	Whole white alabastrum(diploid) 2	1.146
	CNS0095596	Whole white alabastrum(diploid) 3	0.999
	CNS0095597	Whole white alabastrum(diploid) 4	1.436
	CNS0095598	Silvery flower (diploied) 1	4.258
	CNS0095599	Silvery flower (diploied) 2	12.080
	CNS0095600	Silvery flower (diploied) 3	6.748
	CNS0095601	Golden flower (diploid) 1	5.898
	CNS0095602	Golden flower (diploid) 2	3.927
	CNS0095603	Golden flower (diploid) 3	3.824
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.510
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.405
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.540
	CNS0095610	Silvery flower (tetraploid) 1	3.001
	CNS0095611	Silvery flower (tetraploid) 2	7.981
	CNS0095612	Silvery flower (tetraploid) 3	31.319
	CNS0095613	Golden flower (tetraploid) 1	9.743
	CNS0095614	Golden flower (tetraploid) 2	2.585
	CNS0095615	Golden flower (tetraploid) 3	11.139
CRA001975	CRR073297	Stem 1	3.214
	CRR073298	Stem 2	2.686
	CRR073299	Stem 3	2.744
	CRR073300	Leaf 1	0.765
	CRR073301	Leaf 2	1.100
	CRR073302	Leaf 3	1.480
	CRR073303	Juvenile bud 1	4.706
	CRR073304	Juvenile bud 2	12.714
	CRR073305	Juvenile bud 3	3.619
	CRR073306	Third green 1	14.665
	CRR073307	Third green 2	20.086
	CRR073308	Third green 3	15.917
	CRR073309	Second white 1	6.020
	CRR073310	Second white 2	6.003
	CRR073311	Second white 3	7.066
	CRR073312	Silver flowering 1	19.865
	CRR073313	Silver flowering 2	24.855
	CRR073314	Silver flowering 3	11.456
	CRR073315	Gold flowering 1	19.805
	CRR073316	Gold flowering 2	3.235
	CRR073317	Gold flowering 3	16.071
	CRR073318	Tawny withering 1	13.244
	CRR073319	Tawny withering 2	14.657
	CRR073320	Tawny withering 3	13.454