Gene detail

Detail information of GWHGAAZE022478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010105542.1	7.9878E-171	Purple acid phosphatase 3 [Morus notabilis]
COG	YP_007322312.1	1E-46	acid phosphatase
Swissprot	tr\|Q8H129\|PPA3_ARATH	1E-156	Purple acid phosphatase 3 (Precursor)
trEMBL	tr\|W9RRV1\|W9RRV1_9ROSA	3E-171	Purple acid phosphatase 3 {ECO:0000313\|EMBL:EXC05037.1}
TAIR10	AT1G14700.1	7E-120	purple acid phosphatase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73201981	73210672	+
GWHAAZE00000006	mRNA	73201981	73210672	+
GWHAAZE00000006	exon	73201981	73202196	+
GWHAAZE00000006	exon	73206814	73206970	+
GWHAAZE00000006	exon	73209605	73209712	+
GWHAAZE00000006	exon	73209793	73209920	+
GWHAAZE00000006	exon	73210058	73210186	+
GWHAAZE00000006	exon	73210311	73210378	+
GWHAAZE00000006	exon	73210456	73210672	+
GWHAAZE00000006	CDS	73201981	73202196	+
GWHAAZE00000006	CDS	73206814	73206970	+
GWHAAZE00000006	CDS	73209605	73209712	+
GWHAAZE00000006	CDS	73209793	73209920	+
GWHAAZE00000006	CDS	73210058	73210186	+
GWHAAZE00000006	CDS	73210311	73210378	+
GWHAAZE00000006	CDS	73210456	73210672	+

Transcript Sequence
>GWHTAAZE022508 ATGGCTGTTTTGCTCATGAAAAAACCCATGGCCATGCTTATTACTATTTGTGTTATTATAATTGCAGTACCACTTTCTTCTTTGGTTATTCTGGTGGCGGCTGAGCTTCAAACCTTTCGACACCCACCATTAAAAGCCGATGGGTCGCTTAGCGCTTTAGTTGTCGGAGACTGGGGAAGAGGAGGAACTCACAACCAATCTCTAGTTGCTCTTCAGATGGGCTTAATTGGAGAGAAGTTGGATGTAGATTTCGTAATATCGACAGGCGATAACTTTTATGACAACGGGTTAACGGATGTAAATGATCCAACTTTTGATGAGTCATTTACCCAAATTTACACTGCCCCAAGCTTGCAAAAGCAATGGTACACTGTTTTGGGGAATCATGACTACAGAGGAGATGTTTTGGCACAATTGAGTCCCACTCTTACAAAATGGGATAGCAGATGGATGTGCCTCAGGTCTTATATTGTCAATTCAGAAGTGGTAGATTTTTTCTTCGTAGATACAACTCCGTTCGAAGATAAATACTTTTCGAATGCAGAGGACCATACATATGATTGGAGAGGCGTGCTTCCACGAAAAAAATATCTTTCGAATCTCTTGAAGGATGTAGATTTGGCCTTGAGAAAATCAAGTGCAAAATGGAAGATAGTGGTGGGTCACCATACGATAAGAAGCGCAGGGCATCATGGTAACACTGAGGAGCTTGTTGCAAAATTTCTCCCAATTCTCCAGGCAAACAGTGTCGATCTTTACATAAACGGGCACGACCATTGTTTGCAACGTATTAGTAGCCCTGACAGTCCATTACAATTTTTAACAAGTGGAGGAGGTTCAAAGGCATGGAGAGGTGATATAAGTTGGGCGACGACCTCAAAGGAGATGAAGTTCTATTATGATGGGCAAGGTTTTATGTCAATTCAGATTACTCAAACTCAGCTTAATGTCAGCTTCTACGACGTTTTTGGCAGTGTTCTCCATAAATGGAACACTACCAAATCCCTCTACTCTGCGATTTAG

Network for GWHGAAZE022478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	53	260	2.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14379	ACP5	Metabolic pathways	map01100
		Riboflavin metabolism	map00740
		Lysosome	map04142
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0003993	molecular_function	acid phosphatase activity
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.694
	SRR3591706	second leaf	26.297
	SRR3591707	mature leaf	77.337
	SRR3591708	Shoot apex	8.038
	SRR3591709	Stem	49.768
	SRR3591710	White floral bud	31.953
	SRR3591711	White flower	52.467
	SRR3591712	Green floral bud	9.021
	SRR3591713	Yellow flower	201.200
SRP173429	SRR8316895	Juvenile bud stage	7.626
	SRR8316896	Juvenile bud stage	9.046
	SRR8316897	Juvenile bud stage	4.386
	SRR8316894	Third green stage	4.846
	SRR8316900	Third green stage	7.896
	SRR8316901	Third green stage	8.566
	SRR8316898	Complete white stage	8.240
	SRR8316899	Complete white stage	6.941
	SRR8316903	Complete white stage	11.999
	SRR8316902	Silver flowering stage	5.178
	SRR8316904	Silver flowering stage	11.452
	SRR8316905	Silver flowering stage	4.969
	SRR8316906	Gold flowering stage	11.478
	SRR8316907	Gold flowering stage	27.271
	SRR8316908	Gold flowering stage	23.785
SRP132670	SRR6706286	Control	23.044
	SRR6706287	Light intensity 50%	21.208
	SRR6706288	Light intensity 20%	14.678
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.622
	CNS0095593	Slightly white alabastrum(diploid) 2	8.962
	CNS0095594	Slightly white alabastrum(diploid) 3	17.219
	CNS0095595	Whole white alabastrum(diploid) 2	11.821
	CNS0095596	Whole white alabastrum(diploid) 3	6.397
	CNS0095597	Whole white alabastrum(diploid) 4	15.974
	CNS0095598	Silvery flower (diploied) 1	102.396
	CNS0095599	Silvery flower (diploied) 2	44.494
	CNS0095600	Silvery flower (diploied) 3	38.354
	CNS0095601	Golden flower (diploid) 1	52.602
	CNS0095602	Golden flower (diploid) 2	97.324
	CNS0095603	Golden flower (diploid) 3	100.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.724
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.926
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.692
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.013
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.691
	CNS0095610	Silvery flower (tetraploid) 1	55.708
	CNS0095611	Silvery flower (tetraploid) 2	57.268
	CNS0095612	Silvery flower (tetraploid) 3	35.050
	CNS0095613	Golden flower (tetraploid) 1	104.700
	CNS0095614	Golden flower (tetraploid) 2	92.784
	CNS0095615	Golden flower (tetraploid) 3	105.535
CRA001975	CRR073297	Stem 1	9.950
	CRR073298	Stem 2	5.858
	CRR073299	Stem 3	6.853
	CRR073300	Leaf 1	1.407
	CRR073301	Leaf 2	2.335
	CRR073302	Leaf 3	0.586
	CRR073303	Juvenile bud 1	1.610
	CRR073304	Juvenile bud 2	2.248
	CRR073305	Juvenile bud 3	1.973
	CRR073306	Third green 1	1.214
	CRR073307	Third green 2	3.164
	CRR073308	Third green 3	2.713
	CRR073309	Second white 1	30.293
	CRR073310	Second white 2	13.145
	CRR073311	Second white 3	11.414
	CRR073312	Silver flowering 1	24.226
	CRR073313	Silver flowering 2	26.289
	CRR073314	Silver flowering 3	25.525
	CRR073315	Gold flowering 1	73.301
	CRR073316	Gold flowering 2	79.295
	CRR073317	Gold flowering 3	64.729
	CRR073318	Tawny withering 1	20.101
	CRR073319	Tawny withering 2	37.045
	CRR073320	Tawny withering 3	27.877