Gene detail

Detail information of GWHGAAZE022486

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648962.1	0	PREDICTED: histidine kinase 4 isoform X2 [Vitis vinifera]
COG	YP_644044.1	9E-89	multi-sensor hybrid histidine kinase
Swissprot	tr\|Q9C5U0\|AHK4_ARATH	0	Histidine kinase 4
trEMBL	tr\|F6HFB2\|F6HFB2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50761.1}
TAIR10	AT2G01830.2	0	CHASE domain containing histidine kinase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73311864	73316952	+
GWHAAZE00000006	mRNA	73311864	73316952	+
GWHAAZE00000006	exon	73311864	73312157	+
GWHAAZE00000006	exon	73312262	73312495	+
GWHAAZE00000006	exon	73312596	73312765	+
GWHAAZE00000006	exon	73313578	73313796	+
GWHAAZE00000006	exon	73313879	73314122	+
GWHAAZE00000006	exon	73314215	73314266	+
GWHAAZE00000006	exon	73314373	73314602	+
GWHAAZE00000006	exon	73314773	73314871	+
GWHAAZE00000006	exon	73314994	73315676	+
GWHAAZE00000006	exon	73315770	73316249	+
GWHAAZE00000006	exon	73316691	73316952	+
GWHAAZE00000006	CDS	73311864	73312157	+
GWHAAZE00000006	CDS	73312262	73312495	+
GWHAAZE00000006	CDS	73312596	73312765	+
GWHAAZE00000006	CDS	73313578	73313796	+
GWHAAZE00000006	CDS	73313879	73314122	+
GWHAAZE00000006	CDS	73314215	73314266	+
GWHAAZE00000006	CDS	73314373	73314602	+
GWHAAZE00000006	CDS	73314773	73314871	+
GWHAAZE00000006	CDS	73314994	73315676	+
GWHAAZE00000006	CDS	73315770	73316249	+
GWHAAZE00000006	CDS	73316691	73316952	+

Transcript Sequence
>GWHTAAZE022516 ATGAGGCCGAATGAACAAATGTGCACCAAAAGGAAATACATGTTCATCAAGAAAGCTTGGCTCCCGAAAATTCTAGTCATCTGGATCATAATTGTGGCACTTATTGGCAGAGTTATTTACAATACGATGGATGCCGATGACAAGGAGAGAAGGAAAGAAGTACTCGAGAGCATGTGCGATCAAAGGGCTAGGATGTTACAAGATCAATTCAGTGCTAGCATTAACCATGTTCATGCACTTGCGGTCCTCGTTTCAACTTTTCATTATTCCAAGACCCCATCAACAGTTGATCAGAAAACATTTGCCCAGTACACGGCCAGAACGGCTTTTGAGAGGCCATTGTTGAGTGGAGTGGCATATGCTCAAAGGGTTCTAAATTCGGAGAGGAAAGAATTCGAGAGGATACATGGTTGGACCATAATGACAATGGACAAGAAGCCTTCTCCTATCCGGGATGAGTATGCACCTGTGGTATTCTCTCAAGAAACTATTTCTTACATTGAATCACTTGATATGATGTCTGGAGAGGAGGACCGCGAGAACATTTTGAGGTCTAGGGCTACTGGAAAATCAGTTCTCACAAGCCCTTTCAGATTGCTGGGTTCTCATCATCTTGGGGTTGTGCTTACATTTCCTGTTTACAAGTTCAAGCTCTCCCCAGATCCAACTGCGGAAGAACGCATTAGAGCAACTGCTGGATACCTTGGTGGAGCCTTTGATGTTGAGACCTTGGTTGAAAATCTCCTTGGGAAACTTGCTGAATACCAGGAGATAGCGGTGAATGTATATGATGTTACGAACTCTTCTGAACCCCTCATCATGTATGGCCGCCAACGTGAAGATGGTGACTTGTTGCTTAAGCGTGTGAGCCCCCTTGACTTTGGGGATCCCTATCGGAAACACCATATGATATGTAGAAAACTAAGTCTTTCGGTTGTTGCTACAAATGCCTACCTACTTGGGATCCTAAGCAGGTACCTTCAAAATGCACCGACATCATGGACAGCGATAACGACTGCATTTTTGTTCTCTGTGATTGGTCTACTAGTAGGCTATATGGTATATAGTGCGTTAATTCACATTGTTAAAGTCGAGGACGATTTCCACAAAATGCAGCAATTGAAAGTCCGAGCAGAAGCTGCTGATGTAGCAAAATCCCAGTTTCTAGCTACTGTTTCACATGAAATTAGAACTCCCATGAATGGCATCCTTGGGATGCTTGCCATGATCCTAGATACAGATTTGAGTTCAACACAAAAGGACTATGCTCAGACTGCCCAGGCTTGTGGAAAGTCACTTGTAACCTTGATTAATGAAGTTCTTGACCGGGCAAAAATTGAAGCTGGCAAATTACAGCTGGAGGCAGTCCCATTTGAGATTCGGTCCATGCTAGATGATGTCATCTCTTTGTTTTCCGAGAAGGCTAGGCACAAAGGTGTTGAGCTGGCCCTGCTTGTATCCGATAAAGTTCCATGTATTGTTATTGGGGACCCTGGAAGATTCCGGCAGGTGATTACAAATCTTGTGGACAACTCTGTTAAGTTTACAGAGCGAGGACATATATTTGTTCACGTCCGTCTTGCTAAACATGCAAAAGTGGTGCTGGACAAAAAAGCCGAAACCTCTTCAAATGACAGATCCGAGGGTGTAGTTGCTTCAGGTGACTGTCAATTTGATACTTTAAGCGGCTGCGAAGCTGCTGATGATCGTAATTGTTGGGAGAACCTCGAGCATTTAACTGCTAATGAAGAGCACCAATGCAATTCTTCTCAGAGAGCTACTTTGCTGGTATGTGTTGAAGATACAGGGATTGGGATCCCTCTACATGCCCAAGAGCAATTGTACATGCCATTCATGCAGGCAGATAGTTCAACCTCTCGAAATTATGGAGGTACTGGTATTGGATTGAGCATTAGTAAATGTTTAGTTGAACTGATGGGTGGTCAAATAGGCTTTGTTAGCCGTCCTCAAATTGGTAGCACATTTTCATTCACTTCTGTCTTTAAAATGTGTGAAAAAAACGAAGTTGGCCATTTGAAAAAATCTCTCTGCCAAGATTTGCCTATGACATTCGAAGGATTGAAAGCGGTATTAGTTGATGAGAGACCGCTAAGAGCTGCTGTTACAAAATATCATCTGTTGAGACTCGGCGTCATAGTTGAAGTTGTAAGTAGCATCAGTATGGTGGTTGATATATTGCGGAAAAATGGTTCCTTCAGATCTAGAAATGGGAGGCGGCCTGATATGGTTCTTGTTGACAAGGATACATGGTTATCTAGTGAAGATGGCGACTCTAAACTGAAAGGGCACACATTTAAATCGCCTAAGATGATCCTTATTGCAACCAAGATTACCAGTGGCGAGCTTGAGAAGGCAAAGGCAGAAGGTTTTGCAGATAGGGTTATAATGAAACCGTTGAGAGCAAGCATGATAGCAGCATGCCTTCAGCAGGTTTTGGGGATGAGGAAGGAGGAGCAACAAGACATGGTTTGTGGACCTGGTTTATTTCGTGGACTGCTATATGGCAAGAAAATATTGGTGGTTGATGACAATAGGGTGAACCGCGTAGTTGCTGCCGGTGCACTCAAGAAGTTTGGGGCTAACGTATTGTGTGCCGAGAGTGGCAAAGCTGCTATTGCATTATTTCAGTTCCCACACAATTTTGATGCCTGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAGACGACCCGTCGTATCCGAAAGCTAGAGATAGAAGCAAATGAGCAGGTGATTGAAGAAAGCAGCAGTGAAGGAACATCAAACAAGGTGGAAAGGCACTTGCCGATATTAGCCATGACAGCTGATGTGATCCACGCTACACGTGATGAGTGCCTCAAATGTGGAATGGATGGTTATGTTTCGAAGCCCTTTGAGGAGGAGGATCTTTATCAGGCTGTTACCAAGTTCTTCGAACCAAAAACCACCACAGACCAGTGA

Network for GWHGAAZE022486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03924.14	CHASE	95	275	3.40E-35
PF00512.26	HisKA	384	449	5.10E-17
PF02518.27	HATPase_c	496	665	7.90E-30
PF00072.25	Response_reg	845	976	4.40E-21

Protein Sequence

>GWHPAAZE022502
MRPNEQMCTKRKYMFIKKAWLPKILVIWIIIVALIGRVIYNTMDADDKERRKEVLESMCDQRARMLQDQFSASINHVHALAVLVSTFHYSKTPSTVDQKTFAQYTARTAFERPLLSGVAYAQRVLNSERKEFERIHGWTIMTMDKKPSPIRDEYAPVVFSQETISYIESLDMMSGEEDRENILRSRATGKSVLTSPFRLLGSHHLGVVLTFPVYKFKLSPDPTAEERIRATAGYLGGAFDVETLVENLLGKLAEYQEIAVNVYDVTNSSEPLIMYGRQREDGDLLLKRVSPLDFGDPYRKHHMICRKLSLSVVATNAYLLGILSRYLQNAPTSWTAITTAFLFSVIGLLVGYMVYSALIHIVKVEDDFHKMQQLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMILDTDLSSTQKDYAQTAQACGKSLVTLINEVLDRAKIEAGKLQLEAVPFEIRSMLDDVISLFSEKARHKGVELALLVSDKVPCIVIGDPGRFRQVITNLVDNSVKFTERGHIFVHVRLAKHAKVVLDKKAETSSNDRSEGVVASGDCQFDTLSGCEAADDRNCWENLEHLTANEEHQCNSSQRATLLVCVEDTGIGIPLHAQEQLYMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFVSRPQIGSTFSFTSVFKMCEKNEVGHLKKSLCQDLPMTFEGLKAVLVDERPLRAAVTKYHLLRLGVIVEVVSSISMVVDILRKNGSFRSRNGRRPDMVLVDKDTWLSSEDGDSKLKGHTFKSPKMILIATKITSGELEKAKAEGFADRVIMKPLRASMIAACLQQVLGMRKEEQQDMVCGPGLFRGLLYGKKILVVDDNRVNRVVAAGALKKFGANVLCAESGKAAIALFQFPHNFDACFMDIQMPEMDGFETTRRIRKLEIEANEQVIEESSSEGTSNKVERHLPILAMTADVIHATRDECLKCGMDGYVSKPFEEEDLYQAVTKFFEPKTTTDQ

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14489	AHK2_3_4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0016310	biological_process	phosphorylation
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.604
	SRR3591706	second leaf	115.115
	SRR3591707	mature leaf	41.857
	SRR3591708	Shoot apex	82.446
	SRR3591709	Stem	56.063
	SRR3591710	White floral bud	77.672
	SRR3591711	White flower	81.516
	SRR3591712	Green floral bud	209.287
	SRR3591713	Yellow flower	21.063
SRP173429	SRR8316895	Juvenile bud stage	119.352
	SRR8316896	Juvenile bud stage	136.003
	SRR8316897	Juvenile bud stage	67.959
	SRR8316894	Third green stage	95.386
	SRR8316900	Third green stage	185.977
	SRR8316901	Third green stage	179.074
	SRR8316898	Complete white stage	15.803
	SRR8316899	Complete white stage	140.048
	SRR8316903	Complete white stage	48.047
	SRR8316902	Silver flowering stage	2.539
	SRR8316904	Silver flowering stage	18.988
	SRR8316905	Silver flowering stage	2.338
	SRR8316906	Gold flowering stage	4.038
	SRR8316907	Gold flowering stage	4.729
	SRR8316908	Gold flowering stage	16.177
SRP132670	SRR6706286	Control	117.976
	SRR6706287	Light intensity 50%	137.776
	SRR6706288	Light intensity 20%	135.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	121.925
	CNS0095593	Slightly white alabastrum(diploid) 2	124.341
	CNS0095594	Slightly white alabastrum(diploid) 3	123.410
	CNS0095595	Whole white alabastrum(diploid) 2	109.902
	CNS0095596	Whole white alabastrum(diploid) 3	118.920
	CNS0095597	Whole white alabastrum(diploid) 4	75.315
	CNS0095598	Silvery flower (diploied) 1	382.194
	CNS0095599	Silvery flower (diploied) 2	260.368
	CNS0095600	Silvery flower (diploied) 3	90.891
	CNS0095601	Golden flower (diploid) 1	301.398
	CNS0095602	Golden flower (diploid) 2	201.950
	CNS0095603	Golden flower (diploid) 3	190.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	132.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	99.963
	CNS0095606	Slightly white alabastrum(tetraploid) 3	247.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.795
	CNS0095609	Whole white alabastrum(tetraploid) 3	210.896
	CNS0095610	Silvery flower (tetraploid) 1	103.983
	CNS0095611	Silvery flower (tetraploid) 2	120.484
	CNS0095612	Silvery flower (tetraploid) 3	44.952
	CNS0095613	Golden flower (tetraploid) 1	2.866
	CNS0095614	Golden flower (tetraploid) 2	94.190
	CNS0095615	Golden flower (tetraploid) 3	32.445
CRA001975	CRR073297	Stem 1	172.490
	CRR073298	Stem 2	191.857
	CRR073299	Stem 3	135.219
	CRR073300	Leaf 1	215.308
	CRR073301	Leaf 2	188.551
	CRR073302	Leaf 3	135.955
	CRR073303	Juvenile bud 1	88.302
	CRR073304	Juvenile bud 2	52.056
	CRR073305	Juvenile bud 3	114.694
	CRR073306	Third green 1	2.888
	CRR073307	Third green 2	4.273
	CRR073308	Third green 3	11.839
	CRR073309	Second white 1	0.904
	CRR073310	Second white 2	1.884
	CRR073311	Second white 3	0.347
	CRR073312	Silver flowering 1	0.275
	CRR073313	Silver flowering 2	0.353
	CRR073314	Silver flowering 3	0.209
	CRR073315	Gold flowering 1	23.748
	CRR073316	Gold flowering 2	40.896
	CRR073317	Gold flowering 3	28.946
	CRR073318	Tawny withering 1	17.536
	CRR073319	Tawny withering 2	10.144
	CRR073320	Tawny withering 3	19.832