Detail information of GWHGAAZE022508


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004503334.10PREDICTED: aspartate-semialdehyde dehydrogenase-like [Cicer arietinum]
COGYP_005444446.14E-146aspartate-semialdehyde dehydrogenase
trEMBLtr|G7LBH4|G7LBH4_MEDTR0Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AET05461.1}
TAIR10AT1G14810.11E-174semialdehyde dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7364895073653542-
GWHAAZE00000006mRNA7364895073653542-
GWHAAZE00000006exon7365298573653542-
GWHAAZE00000006exon7365235573652441-
GWHAAZE00000006exon7365218973652233-
GWHAAZE00000006exon7365198073652075-
GWHAAZE00000006exon7365175973651860-
GWHAAZE00000006exon7365013773650291-
GWHAAZE00000006exon7364895073649367-
GWHAAZE00000006CDS7365298573653542-
GWHAAZE00000006CDS7365235573652441-
GWHAAZE00000006CDS7365218973652233-
GWHAAZE00000006CDS7365198073652075-
GWHAAZE00000006CDS7365175973651860-
GWHAAZE00000006CDS7365013773650291-
GWHAAZE00000006CDS7364928673649367-
GWHAAZE00000006three_prime_UTR7364895073649285-
Transcript Sequence

Network for GWHGAAZE022508

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01118.25Semialdhyde_dh401525.70E-29
PF02774.19Semialdhyde_dhC1803607.90E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00133asd Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Lysine biosynthesismap00300
Monobactam biosynthesismap00261

Gene Ontology

GO term OntologyName
GO:0009086biological_processmethionine biosynthetic process
GO:0009088biological_processthreonine biosynthetic process
GO:0009089biological_processlysine biosynthetic process via diaminopimelate
GO:0009097biological_processisoleucine biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0008652biological_processcellular amino acid biosynthetic process
GO:0004073molecular_functionaspartate-semialdehyde dehydrogenase activity
GO:0050661molecular_functionNADP binding
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.609
SRR3591706second leaf10.758
SRR3591707mature leaf6.179
SRR3591708Shoot apex21.642
SRR3591709Stem16.508
SRR3591710White floral bud18.178
SRR3591711White flower27.508
SRR3591712Green floral bud41.945
SRR3591713Yellow flower32.819
SRP173429 SRR8316895Juvenile bud stage 22.785
SRR8316896Juvenile bud stage 41.254
SRR8316897Juvenile bud stage 18.119
SRR8316894Third green stage 17.373
SRR8316900Third green stage 67.295
SRR8316901Third green stage 57.481
SRR8316898Complete white stage 11.387
SRR8316899Complete white stage 48.757
SRR8316903Complete white stage 15.804
SRR8316902Silver flowering stage13.873
SRR8316904Silver flowering stage17.029
SRR8316905Silver flowering stage10.612
SRR8316906Gold flowering stage 26.139
SRR8316907Gold flowering stage 31.410
SRR8316908Gold flowering stage 29.036
SRP132670SRR6706286Control69.315
SRR6706287Light intensity 50%71.932
SRR6706288Light intensity 20%79.111
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.001
CNS0095593Slightly white alabastrum(diploid) 242.997
CNS0095594Slightly white alabastrum(diploid) 334.088
CNS0095595Whole white alabastrum(diploid) 237.486
CNS0095596Whole white alabastrum(diploid) 347.933
CNS0095597Whole white alabastrum(diploid) 427.817
CNS0095598Silvery flower (diploied) 122.701
CNS0095599Silvery flower (diploied) 219.318
CNS0095600Silvery flower (diploied) 331.298
CNS0095601Golden flower (diploid) 117.519
CNS0095602Golden flower (diploid) 232.479
CNS0095603Golden flower (diploid) 331.131
CNS0095604Slightly white alabastrum(tetraploid) 141.078
CNS0095605Slightly white alabastrum(tetraploid) 234.582
CNS0095606Slightly white alabastrum(tetraploid) 352.690
CNS0095607Whole white alabastrum(tetraploid) 117.794
CNS0095608Whole white alabastrum(tetraploid) 221.287
CNS0095609Whole white alabastrum(tetraploid) 358.661
CNS0095610Silvery flower (tetraploid) 143.902
CNS0095611Silvery flower (tetraploid) 240.064
CNS0095612Silvery flower (tetraploid) 320.644
CNS0095613Golden flower (tetraploid) 130.848
CNS0095614Golden flower (tetraploid) 261.435
CNS0095615Golden flower (tetraploid) 333.466
CRA001975CRR073297Stem 139.544
CRR073298Stem 236.538
CRR073299Stem 336.197
CRR073300Leaf 149.315
CRR073301Leaf 246.689
CRR073302Leaf 346.140
CRR073303Juvenile bud 147.771
CRR073304Juvenile bud 229.404
CRR073305Juvenile bud 348.410
CRR073306Third green 12.888
CRR073307Third green 22.210
CRR073308Third green 32.360
CRR073309Second white 13.873
CRR073310Second white 22.526
CRR073311Second white 31.540
CRR073312Silver flowering 12.986
CRR073313Silver flowering 26.714
CRR073314Silver flowering 37.551
CRR073315Gold flowering 118.841
CRR073316Gold flowering 219.509
CRR073317Gold flowering 314.459
CRR073318Tawny withering 124.122
CRR073319Tawny withering 226.732
CRR073320Tawny withering 327.357