Gene detail

Detail information of GWHGAAZE022512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN21615.1	0	Adagio protein 3 [Glycine soja]
COG	YP_325987.1	2E-23	bacterio-opsin activator
Swissprot	tr\|Q9C9W9\|ADO3_ARATH	0	Adagio protein 3
trEMBL	tr\|I1K5J7\|I1K5J7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G34530.1}
TAIR10	AT1G68050.1	0	flavin-binding, kelch repeat, f box 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73701125	73704033	+
GWHAAZE00000006	mRNA	73701125	73704033	+
GWHAAZE00000006	exon	73701125	73701285	+
GWHAAZE00000006	exon	73702428	73704033	+
GWHAAZE00000006	CDS	73701125	73701285	+
GWHAAZE00000006	CDS	73702428	73704033	+

Transcript Sequence
>GWHTAAZE022542 CGTGGATTCTCCTTGCGACTAGGCGGTTTCTTATCCCCGACGGTACCATCGTCAATTGTCGTCTCCGATGCTATGGAACCTGATTTTCCGATCATTTACGTCAACACCGTCTTCGAAATAACTACTGGTTATCGCGCCGACGAGGTCCTCGGTCGGAACTGTCGGTTCTTACAATATAGAGACCCGCTTGCCCGAAGACGGCACCCTTCGGTTGATCCTGTCGGCGTTTCTGAGATCAGAAGATGTCTGGATGAAGGCATGCAATTCCAAGGCGAGCTTCTCAACTTCAGGAAGGACGGCACTCCTTTGGTGAACAGGCTAACACTAGCTCCAATTCATGACGATGATGGCACAGTGACCCATGTAATAGGCATTCAAGTATTTTCTGAAGCAAAAATTGATCTCAATAGCATATCATATCCAGTTTTCAAAGAAACTTGCCTGCAAGAAGGTGATGAATCAGGTGAATATTCTCCAAAAGGTGGACAAGTACAGTATAGCCATAATAGAGAAGTATGTGGAATTCTTCAGCTCTCAGATGAAGTACTAGCACAGAACATTTTATCACGCTTGACACCAAGGGATGTGGCTTCCATTGGGTCAGTCTGCAGAAGAATTCGGCAGCTAACAAAGAATGAACATGTAAGAAAGATGGTGTGTCAAAATGCATGGGGAAGAGATGTCACTGGTGCATTGGAACTGATGACAAAAAAATTAGGGTGGGGCCGATTGGCTCGGGAGCTGACCACGCTCGAGGCTGTTTGTTGGAAAAAGCTCACAGTTGGAGGTGCAGTGGAGCCCTCGCGTTGCAATTTCAGCGCGTGTGCAGCAGGGAATCGGCTAGTCTTGTTTGGAGGGGAAGGAGTTAACATGCAGCCAATGGATGATACATTTGTTCTCAACCTTGATTCTGCAAATCCAGAGTGGCAACGGGTGATTGTAAAGTCGGCCCCACCAGGGCGGTGGGGCCATACCCTCTCGTGCCTCAACGGTTCCTGGTTGGTGGTGTTTGGTGGCTGTGGGCGGCAAGGATTGCTCAACGACGTGTTTGTTCTTGACCTGGATGCCAAACAACCTACCTGGATAGAAGTCTCAGGTGGGACCCCCCCTCTTCCACGGTCCTGGCATAGCTCTTGCACAGTTGAAGGTTCAAAACTAGTAGTTTCAGGTGGGTGCACGGATGCGGGTGTGCTACTGAGTGACACCTACTTGTTGGACCTGACTAAAGAAAAACCCATGTGGAAAGAGATTCCTTCTTCATGGACACCACCCTCTAGATTGGGACACTCACTCTCGGTTTACAGCAGAACAAAGATTCTTATGTTTGGTGGACTTGCAAATAGCGGGCACGTGCGGCTCCGGTCAGGCGAGGCGTATACCATCGATTTGGAAGATGAAAAGCCGCAGTGGAGGCAACTTGAGTGTGGTGCATTTACGGGAGTAGGTACTCAGAGTGCTGTGGTCCCCCCTCCTCGACTCGATCATGTGGCTGTGAGCATGCCATGTGGCCGGGTAATCATCTTTGGTGGTTCAATTGCCGGGCTCCACTCTCCTTCACAGCTTTTCTTGTTGGATCCCGCCGAAGAGAAACCATCATGGAGGATTCTGAATGTTCCTGGGCAGCCGCCGAAATTTGCATGGGGCCATAGCACCTGTGTGGTTGGTGGGACCAGAGTTTTGGTCCTGGGCGGGCACACTGGAGAAGAATGGGTTCTCAATGAATTGCATGAGTTGTGCTTGGCAAGCAAACAGGACTCGGATCCATGA

Network for GWHGAAZE022512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13426.8	PAS_9	25	126	3.50E-18
PF00646.34	F-box	175	213	0.00011
PF13418.7	Kelch_4	269	319	2.00E-10
PF13415.7	Kelch_3	334	380	6.30E-10
PF13415.7	Kelch_3	383	434	1.20E-06
PF07646.16	Kelch_2	493	540	1.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K12116	FKF1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.057
	SRR3591706	second leaf	0.708
	SRR3591707	mature leaf	4.618
	SRR3591708	Shoot apex	0.525
	SRR3591709	Stem	5.340
	SRR3591710	White floral bud	64.891
	SRR3591711	White flower	32.280
	SRR3591712	Green floral bud	75.201
	SRR3591713	Yellow flower	7.077
SRP173429	SRR8316895	Juvenile bud stage	2.855
	SRR8316896	Juvenile bud stage	5.269
	SRR8316897	Juvenile bud stage	1.570
	SRR8316894	Third green stage	2.080
	SRR8316900	Third green stage	9.247
	SRR8316901	Third green stage	6.060
	SRR8316898	Complete white stage	4.105
	SRR8316899	Complete white stage	32.642
	SRR8316903	Complete white stage	7.733
	SRR8316902	Silver flowering stage	4.864
	SRR8316904	Silver flowering stage	5.281
	SRR8316905	Silver flowering stage	1.851
	SRR8316906	Gold flowering stage	2.965
	SRR8316907	Gold flowering stage	4.937
	SRR8316908	Gold flowering stage	7.276
SRP132670	SRR6706286	Control	6.320
	SRR6706287	Light intensity 50%	6.783
	SRR6706288	Light intensity 20%	10.307
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.396
	CNS0095593	Slightly white alabastrum(diploid) 2	10.648
	CNS0095594	Slightly white alabastrum(diploid) 3	5.438
	CNS0095595	Whole white alabastrum(diploid) 2	12.346
	CNS0095596	Whole white alabastrum(diploid) 3	10.617
	CNS0095597	Whole white alabastrum(diploid) 4	26.140
	CNS0095598	Silvery flower (diploied) 1	21.368
	CNS0095599	Silvery flower (diploied) 2	6.916
	CNS0095600	Silvery flower (diploied) 3	14.411
	CNS0095601	Golden flower (diploid) 1	5.920
	CNS0095602	Golden flower (diploid) 2	14.532
	CNS0095603	Golden flower (diploid) 3	14.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.379
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.466
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.061
	CNS0095610	Silvery flower (tetraploid) 1	19.366
	CNS0095611	Silvery flower (tetraploid) 2	35.716
	CNS0095612	Silvery flower (tetraploid) 3	258.390
	CNS0095613	Golden flower (tetraploid) 1	27.748
	CNS0095614	Golden flower (tetraploid) 2	18.297
	CNS0095615	Golden flower (tetraploid) 3	28.077
CRA001975	CRR073297	Stem 1	22.059
	CRR073298	Stem 2	22.324
	CRR073299	Stem 3	38.258
	CRR073300	Leaf 1	20.890
	CRR073301	Leaf 2	18.537
	CRR073302	Leaf 3	20.461
	CRR073303	Juvenile bud 1	35.855
	CRR073304	Juvenile bud 2	8.953
	CRR073305	Juvenile bud 3	42.283
	CRR073306	Third green 1	2.440
	CRR073307	Third green 2	5.041
	CRR073308	Third green 3	3.962
	CRR073309	Second white 1	8.974
	CRR073310	Second white 2	4.805
	CRR073311	Second white 3	3.456
	CRR073312	Silver flowering 1	3.148
	CRR073313	Silver flowering 2	3.958
	CRR073314	Silver flowering 3	8.229
	CRR073315	Gold flowering 1	11.814
	CRR073316	Gold flowering 2	11.752
	CRR073317	Gold flowering 3	19.205
	CRR073318	Tawny withering 1	13.341
	CRR073319	Tawny withering 2	11.088
	CRR073320	Tawny withering 3	12.922