Gene detail

Detail information of GWHGAAZE022517

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652183.1	0	PREDICTED: protein VAC14 homolog isoform X2 [Vitis vinifera]
COG	YP_003889458.1	7E-68	UDP-3-0-acyl N-acetylglucosamine deacetylase
Swissprot	tr\|Q9ZU97\|VAC14_ARATH	0	Protein VAC14 homolog
trEMBL	tr\|M5Y3P4\|M5Y3P4_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26405.1}
TAIR10	AT2G01690.1	0	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73790503	73828224	+
GWHAAZE00000006	mRNA	73790503	73828224	+
GWHAAZE00000006	exon	73790503	73791124	+
GWHAAZE00000006	exon	73792295	73792414	+
GWHAAZE00000006	exon	73792563	73792695	+
GWHAAZE00000006	exon	73792779	73792937	+
GWHAAZE00000006	exon	73794021	73794176	+
GWHAAZE00000006	exon	73795551	73795859	+
GWHAAZE00000006	exon	73805903	73806109	+
GWHAAZE00000006	exon	73809920	73810021	+
GWHAAZE00000006	exon	73811341	73811405	+
GWHAAZE00000006	exon	73812076	73812220	+
GWHAAZE00000006	exon	73817205	73817303	+
GWHAAZE00000006	exon	73817396	73817509	+
GWHAAZE00000006	exon	73817615	73817683	+
GWHAAZE00000006	exon	73818773	73818862	+
GWHAAZE00000006	exon	73818948	73819067	+
GWHAAZE00000006	exon	73819173	73819201	+
GWHAAZE00000006	exon	73819312	73819454	+
GWHAAZE00000006	exon	73819548	73819642	+
GWHAAZE00000006	exon	73821204	73821290	+
GWHAAZE00000006	exon	73821450	73821557	+
GWHAAZE00000006	exon	73821709	73821800	+
GWHAAZE00000006	exon	73822034	73822115	+
GWHAAZE00000006	exon	73822614	73822679	+
GWHAAZE00000006	exon	73823756	73823871	+
GWHAAZE00000006	exon	73823993	73824113	+
GWHAAZE00000006	exon	73824239	73824421	+
GWHAAZE00000006	exon	73824538	73824666	+
GWHAAZE00000006	exon	73826178	73826426	+
GWHAAZE00000006	exon	73828102	73828224	+
GWHAAZE00000006	five_prime_UTR	73790503	73790621	+
GWHAAZE00000006	CDS	73790622	73791124	+
GWHAAZE00000006	CDS	73792295	73792414	+
GWHAAZE00000006	CDS	73792563	73792695	+
GWHAAZE00000006	CDS	73792779	73792937	+
GWHAAZE00000006	CDS	73794021	73794176	+
GWHAAZE00000006	CDS	73795551	73795859	+
GWHAAZE00000006	CDS	73805903	73806109	+
GWHAAZE00000006	CDS	73809920	73810021	+
GWHAAZE00000006	CDS	73811341	73811405	+
GWHAAZE00000006	CDS	73812076	73812220	+
GWHAAZE00000006	CDS	73817205	73817303	+
GWHAAZE00000006	CDS	73817396	73817509	+
GWHAAZE00000006	CDS	73817615	73817683	+
GWHAAZE00000006	CDS	73818773	73818862	+
GWHAAZE00000006	CDS	73818948	73819067	+
GWHAAZE00000006	CDS	73819173	73819201	+
GWHAAZE00000006	CDS	73819312	73819454	+
GWHAAZE00000006	CDS	73819548	73819642	+
GWHAAZE00000006	CDS	73821204	73821290	+
GWHAAZE00000006	CDS	73821450	73821557	+
GWHAAZE00000006	CDS	73821709	73821800	+
GWHAAZE00000006	CDS	73822034	73822115	+
GWHAAZE00000006	CDS	73822614	73822679	+
GWHAAZE00000006	CDS	73823756	73823871	+
GWHAAZE00000006	CDS	73823993	73824113	+
GWHAAZE00000006	CDS	73824239	73824421	+
GWHAAZE00000006	CDS	73824538	73824666	+
GWHAAZE00000006	CDS	73826178	73826426	+
GWHAAZE00000006	CDS	73828102	73828224	+

Transcript Sequence
>GWHTAAZE022547 ACACCCAAATTTTTATTAGAAAGTAAGTAGAGAGTAATGTTCATACCACATCTTCCCTCTCTTCCAAACTCTTACCTTTATTATACCTCTAGTCTAGTCTAGTCTAGAAAAACCCTTAAATGGCTGAAATGAACACAACCTCCACAGAAACCACCGCACCGCTACTCCGGCCACGGCAGGGTTCCTCAGGCGAGGTGGCGCGGCCCGCTACTCTAGCGATGCTCCTCGGGAGGGCCACGGGAAGGCGGGGCCCGTCCATGCTGGTGAGGGAGACGGCCGCCCGTCAGCTGGAGGAGCGCCGCGTTGACTGGGGTTACTCGAAGCCGGTGGTGGCCCTAGACATGATGTGGAACCTGGCGTTCGTGATTGTCAGTGTAGTCATGTTGAGTTGTACGGTAAGAGAGAGGCCGAATGTGCCAATTAGGGTTTGGATCTGCGGTTACGCTTTGCAGTGCTCGGTGCACGTGGTGCTCGTGTGGTTGGAGTACCGGAGGAGGAACTTTAGGAGAGGAAGGGATGAGGAGGGAACGAGGCCGCCTTATCAATCTGATCTGAATGATAGTGAGGAGGAGGATGCCCCGGATGGGAGTGTTGGGGTTTTGGGAATTACAAACATGTCCAGTGTCACAAGAAGATGTGAATCTGTGAATACAATGGTGTCATTTCTGTGGTGGATAGTAGGCTTCTACTGGGTAGTCTCTGGTGGTGAGATTCTTCTGCAGAGTTCCCCACGTCTGTACTGGTTGGCTGTGGTATTTCTGGCGTTCGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATCGCTCTTTGTTGCTGCTTGCCCTGTATCATTGCAATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCATCAGAAGCAGATCTCAGTGTTCTTCCTAAGTACAGATTTCAAATATCTGGTGACGCGGAAAAGCCCCAAGTCGGAGCTGGTAGAATGGTTCCGATTGAGACAAGCAGTGGATACTTGGCAAATGACCGCATTCTTTTACCTGAGGATGCGGAATGCTGTATATGTCTGTGTCCCTATGAGGATGGAACAGAGCTTCATACTCTACCCTGCAATCACCATTTCCACTCTACATGTATTGTGAAATGGCTGAAAATGAATGCGACATGTCCCCTCTGCAAGTACAACATCCTAAAGGGTAATGAACAGACTGGTAAGTTCCAGCAAACAATAGCCAACTGTGTAGAGAAAACCGGTAGGGCCCTTCACTCTGGAAACCTAACGGCCGTTAAGATTCTTCCGGAGTTCGCCGGAGAAGGTAGATTCTTCGATTTTGATTCCAAGTATATTCCAGCATCCATAGATTTCGCCCAAGTCTCTCCTCTCTGTACAAAGCTCTGTAAAGATGGTCACACTGTTCAAACCGTTGAGCATCTGCTTTCGGCTTTGGAGGGAACTGGCGTCGACAATTGTCGAATCGAAATCACAAACTTGGGACGGAAGGACCGTTTTGCTGAGGTTCCTATTTTTGATGGGTCGGCAAGGGAATGGGTGGAGGCTATAGAACAAGTTGGGTTGAAGGCTGCCACGGATCGAAGTGGTAATAGTTGTGAAAAACTAGCACCGTTTCTGAATGAAACTGTTCATGTATGGAAGAATGATTCATTCATAATGGCATTTCCCTTTCAAAGGGTTGACATTACTTATGGAATAAACTTCCCGCAGGTGCCTGTTATTGGCTGCCAATGGTTTTCCTCCATGTTGTTAAACGACTCTTTCTATGCTAAGCAAATAGCTCCATCTAGGACCTTTTGCATTTATGAAGAGGTAGAACGAATGCGAGAGGCAGGACTCATTAAGGGGGGTTCTACAGAAAATGCCATTGTTTGTAGTACCAGTAGAGGTTGGTTGAATCCACCACTGCGTTTCAATGACGAGCCTTGCAGACACAAGGTTTTAGATCTTATTGGCGATGTTTCGCTTTTCGCACGAGATGGTAATCAAGGGCTTCCAATGGCACGCATAATTGCTTACAAGGCTTTTGATATGGCCGACGGTTTCTCTGCCATTCCTGCATTCGTTCTCCGAAACCTCTCCGACAAGCTCTACGAGAAGCGGAAGAATGCTGCCCTTGAGATCGAAGGAATTGTGAAGCAATTGGCATTGGCTGGAGATCATGATAAGATTACGGCGTTGATCAAATTGTTAACTAATGAATTCACTTATTCGCCACAGGCAAATCACCGGATGGGAGGATTAATAGCGTTGGCTGCGACTACAGTTGGTTTGACTTCAGAAGCTGCATCACAGCATCTAGAGCAAATTGTACCACCAGTGATAAATTCCTTTTCTGACCAAGATAGCAAAGTTCGTTATAATGCTTGTGAAGCTCTCTATAACATTGCGAAGATTGTGAGAGGAGATTTGATTGTGTTCTTCAATCAGATTTTTGATGCATTATGCAAGCTTTCAGCAGATTCAGATGCCAGTGTACAGAGTGCTGCTCATCTTCTAGATAGACTTGTAAAGGACATTGTCACAGATGGCGATCAATTCAGCATTGAAGAATTCATACCATTACTAAGAGAGCGGATGAATGTCCTCAATCCATATGTCCGGCAATTTCTGGTAGGATGGATCACCGTATTAGATGGTGTACCAGATATCGATATGCTGGGTTTTCTCCCTGATTTTCTTGATGGTTTATTCAATATGTTAAGTGATTCTAGCCGTGAAATACGGCAGCAAGCTGATTCGGCACTTTCAGAGTTTCTGCAAGAGATCAAGAACTATCCATCTGTAGATTATGGTCGCCTGGCTGATATACTTGTACAGAGGGCCGCTTCCCCTGATGAATTTACTAGGTTGACTGCTATTACTTGGATTAATGAGTTAGTAAAACTTGGTGGGGACCAACTTGTTCCTTACTATGCTGATATCCTGGGAGCCATTTTGCCATGCATAGCTGATAAAGAAGAGAAAATACGAGCTGTAGCTTGTGAAACTAATGCAGGACTTCGCTTGATCGAAGCTGATCCTGCTGAAGGATTTGATGTAGGAGCAATACTGTTTATTGCACGGAGGCAGTTGTCTAGTGAATGGGAGGCTACTCGAATTGAAGCACTGCACTGGATTTCCACCCTTTTAAATAGACATCGGCCAGAGGTTCTTCTACTTCTGAAAGATCTTCTTGAAACTCTTCTAAAGGCTGTATCAGATCCAAATGATGAGGTGGTACTCCTGGTTCTTGAGGTTCATTCATGCATAGCAAAAGATCCAATGCACTTTAGCCAGCTTCTTGGTTTCTTAGTTCATAACTTTCGAAGTGACAATTCTCTGCTGGAGAGGCGTGGTGCATTGATTATCCGCCGACTTTGTGTACTATTAGATGCGGAAAGAGTTTACCGGGAACTTTCCTTGATACTCGAGGAAGAAACTGACCTGGAGTTTGCGTCTATTATGATTCAGGCTTTGAATATAATTCTGCTCACGTCCTCTGAGTTGTCTGACCTTCGAAATCTTCTAAAACAATCATTGGTCAATGCTGCTGGGAAAGACTTGCTTCTTTCTTTGTATGCTTCATGGTGTCATTCACCAATGGCAATAATAAGTCTTTGCTTATTAGCTCAGGCAAGAACCTGGAACTTTGTGGCTTATCAGCATGTGAGTTCTGTCATTCAGTCACTGGTTGAGGAGGATATTAACGTTAAGTTCTTGGTTGAGCTGGACAAATTGGTCCAGCTGCTGGAGACTCCTATCTTTGCTCATCTTAGGTTGCAGCAAAGTTCTGCCTTCAAAATTCTGCGGATCCGATTGAAAACTGTACCTCTGTACCCCTCACAAAATAGTTACCTTTCAAGCGGATTGCAAATCTCCTTGGACAGTGAAGTGAATGCAGATTCAGATAATGTGCACAAAGGACTGAACCTTGCTTCTAGACTGCAACAGTTCGAGAAGATGCAGCAGCAGCAGCGTATGCATTCAAAATCACGGGCACAATTACGCTACAATTTCGCTTCATCATCTGAGGAGGTGCAAAGACCAGAAGAACCCAACCTATCCTCGGCTGCACCAAACATAAGCAAACCTCGTGATGTTAACATAAGCAAACCTCCTTCAAAAACATCACGTTTAAGACAGTTAAAACTTTGA

Network for GWHGAAZE022517

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	306	348	1.10E-11
PF03331.14	LpxC	362	634	1.10E-75
PF12755.8	Vac14_Fab1_bd	701	798	2.60E-37
PF11916.9	Vac14_Fig4_bd	1066	1214	2.10E-49

Protein Sequence

>GWHPAAZE022533
MAEMNTTSTETTAPLLRPRQGSSGEVARPATLAMLLGRATGRRGPSMLVRETAARQLEERRVDWGYSKPVVALDMMWNLAFVIVSVVMLSCTVRERPNVPIRVWICGYALQCSVHVVLVWLEYRRRNFRRGRDEEGTRPPYQSDLNDSEEEDAPDGSVGVLGITNMSSVTRRCESVNTMVSFLWWIVGFYWVVSGGEILLQSSPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSVLPKYRFQISGDAEKPQVGAGRMVPIETSSGYLANDRILLPEDAECCICLCPYEDGTELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQTGKFQQTIANCVEKTGRALHSGNLTAVKILPEFAGEGRFFDFDSKYIPASIDFAQVSPLCTKLCKDGHTVQTVEHLLSALEGTGVDNCRIEITNLGRKDRFAEVPIFDGSAREWVEAIEQVGLKAATDRSGNSCEKLAPFLNETVHVWKNDSFIMAFPFQRVDITYGINFPQVPVIGCQWFSSMLLNDSFYAKQIAPSRTFCIYEEVERMREAGLIKGGSTENAIVCSTSRGWLNPPLRFNDEPCRHKVLDLIGDVSLFARDGNQGLPMARIIAYKAFDMADGFSAIPAFVLRNLSDKLYEKRKNAALEIEGIVKQLALAGDHDKITALIKLLTNEFTYSPQANHRMGGLIALAATTVGLTSEAASQHLEQIVPPVINSFSDQDSKVRYNACEALYNIAKIVRGDLIVFFNQIFDALCKLSADSDASVQSAAHLLDRLVKDIVTDGDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDGVPDIDMLGFLPDFLDGLFNMLSDSSREIRQQADSALSEFLQEIKNYPSVDYGRLADILVQRAASPDEFTRLTAITWINELVKLGGDQLVPYYADILGAILPCIADKEEKIRAVACETNAGLRLIEADPAEGFDVGAILFIARRQLSSEWEATRIEALHWISTLLNRHRPEVLLLLKDLLETLLKAVSDPNDEVVLLVLEVHSCIAKDPMHFSQLLGFLVHNFRSDNSLLERRGALIIRRLCVLLDAERVYRELSLILEEETDLEFASIMIQALNIILLTSSELSDLRNLLKQSLVNAAGKDLLLSLYASWCHSPMAIISLCLLAQARTWNFVAYQHVSSVIQSLVEEDINVKFLVELDKLVQLLETPIFAHLRLQQSSAFKILRIRLKTVPLYPSQNSYLSSGLQISLDSEVNADSDNVHKGLNLASRLQQFEKMQQQQRMHSKSRAQLRYNFASSSEEVQRPEEPNLSSAAPNISKPRDVNISKPPSKTSRLRQLKL

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009245	biological_process	lipid A biosynthetic process
GO:0008759	molecular_function	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.207
	SRR3591706	second leaf	11.051
	SRR3591707	mature leaf	11.465
	SRR3591708	Shoot apex	16.084
	SRR3591709	Stem	19.951
	SRR3591710	White floral bud	14.617
	SRR3591711	White flower	16.862
	SRR3591712	Green floral bud	13.722
	SRR3591713	Yellow flower	23.085
SRP173429	SRR8316895	Juvenile bud stage	7.854
	SRR8316896	Juvenile bud stage	12.655
	SRR8316897	Juvenile bud stage	4.579
	SRR8316894	Third green stage	6.045
	SRR8316900	Third green stage	12.279
	SRR8316901	Third green stage	12.454
	SRR8316898	Complete white stage	7.263
	SRR8316899	Complete white stage	19.633
	SRR8316903	Complete white stage	11.198
	SRR8316902	Silver flowering stage	9.620
	SRR8316904	Silver flowering stage	13.447
	SRR8316905	Silver flowering stage	7.016
	SRR8316906	Gold flowering stage	32.929
	SRR8316907	Gold flowering stage	27.045
	SRR8316908	Gold flowering stage	34.106
SRP132670	SRR6706286	Control	13.832
	SRR6706287	Light intensity 50%	13.780
	SRR6706288	Light intensity 20%	13.441
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.937
	CNS0095593	Slightly white alabastrum(diploid) 2	9.369
	CNS0095594	Slightly white alabastrum(diploid) 3	11.432
	CNS0095595	Whole white alabastrum(diploid) 2	8.246
	CNS0095596	Whole white alabastrum(diploid) 3	8.474
	CNS0095597	Whole white alabastrum(diploid) 4	8.574
	CNS0095598	Silvery flower (diploied) 1	11.712
	CNS0095599	Silvery flower (diploied) 2	10.713
	CNS0095600	Silvery flower (diploied) 3	18.630
	CNS0095601	Golden flower (diploid) 1	11.093
	CNS0095602	Golden flower (diploid) 2	21.320
	CNS0095603	Golden flower (diploid) 3	20.589
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.176
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.517
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.515
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.397
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.823
	CNS0095610	Silvery flower (tetraploid) 1	17.478
	CNS0095611	Silvery flower (tetraploid) 2	15.463
	CNS0095612	Silvery flower (tetraploid) 3	14.916
	CNS0095613	Golden flower (tetraploid) 1	9.880
	CNS0095614	Golden flower (tetraploid) 2	16.919
	CNS0095615	Golden flower (tetraploid) 3	17.457
CRA001975	CRR073297	Stem 1	19.247
	CRR073298	Stem 2	19.910
	CRR073299	Stem 3	19.307
	CRR073300	Leaf 1	18.313
	CRR073301	Leaf 2	17.189
	CRR073302	Leaf 3	19.013
	CRR073303	Juvenile bud 1	19.245
	CRR073304	Juvenile bud 2	20.951
	CRR073305	Juvenile bud 3	21.483
	CRR073306	Third green 1	11.314
	CRR073307	Third green 2	11.480
	CRR073308	Third green 3	11.775
	CRR073309	Second white 1	21.799
	CRR073310	Second white 2	19.430
	CRR073311	Second white 3	19.906
	CRR073312	Silver flowering 1	23.338
	CRR073313	Silver flowering 2	23.614
	CRR073314	Silver flowering 3	18.411
	CRR073315	Gold flowering 1	17.349
	CRR073316	Gold flowering 2	17.679
	CRR073317	Gold flowering 3	21.247
	CRR073318	Tawny withering 1	28.038
	CRR073319	Tawny withering 2	23.235
	CRR073320	Tawny withering 3	23.223