Gene detail

Detail information of GWHGAAZE022531

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI26850.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZU91\|E133_ARATH	Glucan endo-1,3-beta-glucosidase 3 (Precursor)
trEMBL	tr\|D7T8M9\|D7T8M9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26850.3}
TAIR10	AT2G01630.1	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74087798	74089221	+
GWHAAZE00000006	mRNA	74087798	74089221	+
GWHAAZE00000006	exon	74087798	74089010	+
GWHAAZE00000006	exon	74089130	74089221	+
GWHAAZE00000006	CDS	74087798	74089010	+
GWHAAZE00000006	CDS	74089130	74089221	+

Transcript Sequence
>GWHTAAZE022561 ATGCCGAATCCAACTCAAGTTGTGGCTCTTCTAAAAGCTCAGCAAATTCGAAACGTCAGGCTCCACGACACTGATCAAGCCATGCTACTCGCTCTTGCTAACACTGGGATCTGTGTCACCGTCTCTGTTCCCAATGACCAACTACTAGCCATTGGTCAGTCCAATACCACTGCGGCCAATTGGGTTGCTCGCAACATTCTCACTCATGTCCCTGCTACCAACATCACGTCCATAGCCGTTGGATCGGAAGTCCTCACTGCCCTCCCAAACGCAGCCCCAATCCTCGTGTCTGCCCTCAAATTCATCCAATCTGCCCTTGTAGACGCCAATCTTGATTCTAAGATCAAAGTCTCAACCCCACATTCCTCTTCCATTATCCTCGACTCGTTCCCACCCTCACAAGCATTTTTCAACCGCTCATGGGACCCAGTCATAGTCCCCTTGCTCAAGTTCTTGCAGTCCACCGGTTCGCCTCTTATGCTCAATGTATACCCTTACTATGATTACATGGAATCAAATGGCGTTATCCCATTGGACTATGCGCTCTTTCGCCCTCTCCCTCCAAATAAGGAAGCCGTGGATTCCAACACGCTCTTGCACTATACTAATGTCTTTGATGCAGTTATTGACGCAGCTTATTTTGCTATGTCTTATTTAAACTTTACTAATATTCCCATCATAGTGACGGAATCTGGCTGGCCTTCGAACGGTGACTCCTCTGAGCCAGACGCAACTCTCAATAATGCGAATGTTTACAACAGTAACCTTATCAAGCATGTCCTTAACAACACTGGTACTCCCAAACACCCTGGGGTGGCAATTAGTACATACATTTATGAGCTTTACAACGAAGAGTTGAGGCCTGGGTCCATTTCAGAGAAGAATTGGGGGCTTTTTGATGCCAACGGGGTGCCGGTTTATATCCTACAGTTGACGGATTCTGGGCCCGTTTTGGCAAATGACACTACTAACCAAACATATTGTGTTGCAAAGGGTAGTGCTGATGCAAAGATGCTGCAAGCAGCGTTGGATTGGGCTTGTGGGCCCGGGAAGGTGGATTGCTCTCCGCTGTTGCAAGGGGAACCGTGTTATGAGCCCGATACTGTGGCTGCTCATGCAACATATGCTTTTGATGCGTATTATCACCAAATGGCCTTTGCTGAAGGAACCTGTAACTTCAATGGTGTGGCTACCATTACTACCACAAACCCAAGTCGTTCGTCTTGCGTGTTTCCAGGAAGGTATAAACCATTACTTCTTATCTTCATTTTGATTTTGCATCCTCATGTTTCCAAATTCAGCTGA

Network for GWHGAAZE022531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	2	309	3.10E-75
PF07983.14	X8	327	398	1.60E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19891	GN1_2_3	Metabolic pathways	map01100
K19891	GN1_2_3	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.761
	SRR3591706	second leaf	31.615
	SRR3591707	mature leaf	7.016
	SRR3591708	Shoot apex	25.826
	SRR3591709	Stem	0.387
	SRR3591710	White floral bud	0.558
	SRR3591711	White flower	0.231
	SRR3591712	Green floral bud	1.571
	SRR3591713	Yellow flower	0.175
SRP173429	SRR8316895	Juvenile bud stage	2.752
	SRR8316896	Juvenile bud stage	4.362
	SRR8316897	Juvenile bud stage	1.535
	SRR8316894	Third green stage	2.167
	SRR8316900	Third green stage	3.286
	SRR8316901	Third green stage	2.654
	SRR8316898	Complete white stage	0.122
	SRR8316899	Complete white stage	0.772
	SRR8316903	Complete white stage	0.072
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.001
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.124
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.090
SRP132670	SRR6706286	Control	3.043
	SRR6706287	Light intensity 50%	4.141
	SRR6706288	Light intensity 20%	4.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.170
	CNS0095593	Slightly white alabastrum(diploid) 2	5.722
	CNS0095594	Slightly white alabastrum(diploid) 3	3.898
	CNS0095595	Whole white alabastrum(diploid) 2	3.004
	CNS0095596	Whole white alabastrum(diploid) 3	3.517
	CNS0095597	Whole white alabastrum(diploid) 4	2.302
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.033
	CNS0095600	Silvery flower (diploied) 3	0.323
	CNS0095601	Golden flower (diploid) 1	0.030
	CNS0095602	Golden flower (diploid) 2	0.170
	CNS0095603	Golden flower (diploid) 3	0.103
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.476
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.724
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.424
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.075
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.361
	CNS0095610	Silvery flower (tetraploid) 1	0.310
	CNS0095611	Silvery flower (tetraploid) 2	0.205
	CNS0095612	Silvery flower (tetraploid) 3	0.203
	CNS0095613	Golden flower (tetraploid) 1	0.080
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.081
CRA001975	CRR073297	Stem 1	12.345
	CRR073298	Stem 2	12.802
	CRR073299	Stem 3	18.005
	CRR073300	Leaf 1	8.182
	CRR073301	Leaf 2	9.855
	CRR073302	Leaf 3	7.686
	CRR073303	Juvenile bud 1	5.616
	CRR073304	Juvenile bud 2	1.625
	CRR073305	Juvenile bud 3	3.764
	CRR073306	Third green 1	0.061
	CRR073307	Third green 2	0.062
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.079
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.481
	CRR073316	Gold flowering 2	1.137
	CRR073317	Gold flowering 3	3.542
	CRR073318	Tawny withering 1	0.648
	CRR073319	Tawny withering 2	0.152
	CRR073320	Tawny withering 3	1.330