Gene detail

Detail information of GWHGAAZE022538

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP38092.1	0	hypothetical protein JCGZ_04735 [Jatropha curcas]
COG	YP_004908734.1	2E-79	putative endoglucanase precursor
Swissprot	tr\|Q9CAC1\|GUN8_ARATH	0	Endoglucanase 8 (Precursor)
trEMBL	tr\|A0A067KPL5\|A0A067KPL5_JATCU	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G70710.1	0	glycosyl hydrolase 9B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74162528	74167533	+
GWHAAZE00000006	mRNA	74162528	74167533	+
GWHAAZE00000006	exon	74162528	74162755	+
GWHAAZE00000006	exon	74162837	74163244	+
GWHAAZE00000006	exon	74164793	74164870	+
GWHAAZE00000006	exon	74165032	74165193	+
GWHAAZE00000006	exon	74166136	74166247	+
GWHAAZE00000006	exon	74166813	74166976	+
GWHAAZE00000006	exon	74167210	74167533	+
GWHAAZE00000006	CDS	74162528	74162755	+
GWHAAZE00000006	CDS	74162837	74163244	+
GWHAAZE00000006	CDS	74164793	74164870	+
GWHAAZE00000006	CDS	74165032	74165193	+
GWHAAZE00000006	CDS	74166136	74166247	+
GWHAAZE00000006	CDS	74166813	74166976	+
GWHAAZE00000006	CDS	74167210	74167533	+

Transcript Sequence
>GWHTAAZE022568 ATGGCGCGAAAATCCTGCCGCTCTCCTTCGAATTTACAGGCATTTTCCGTCACTTTCTCACTGACAATCCTCTCCCTCATATCGCCTTCTGTTTGTCGTCATGACTACTCTGATGCTCTCAGAAAAAGCATCCTATTCTTCGAAGGCCAACGCTCCGGCAAGCTCCCGCCGGACCAACGAGTCACGTGGCGTAGAGACTCCGCATTGCGTGACGGCGCCACCGCTGGAGTGGACTTGACGGGTGGCTACTACGACGCCGGCGACAATGTTAAGTTCGGTTTTCCGATGGCATTCACGACTACGCTGCTGTCGTGGAGCGTAATAGACTTCGGGAAGACTATGGGGGCGGAACAGGGGAATGCCATTAAGGCCGTTAAGTGGGGGACGGACTACCTCCTGAAGGCAACGGCGAAGCCTGACGCCGTTTATGTTCAGGTGGGTGATCCGTTTTCGGACCATAACTGTTGGGAGAGACCTGAGGACATGGATACGCTAAGGACGGCGTATAAGATCGATAGGACCCACCCGGGATCCGACGTGGCGGGAGAAACCGCCGCTGCATTGGCTGCTGCATCAATCGTTTTCAGGTCACGTGACCCTGGGTACTCTCGCCTCCTTCTCGATCGTGCCGTTAAAGTGTTCGAGTTTGCTGACAGGCACCGGGGTGCGTACAGCTCCAGCCTACACTCCGCAGTTTGCCCTTTTTACTGTGATGACGAGTTGCTTTGGGCAGCAGCATGGTTACACAAAGCATCGAGGAGGCGCGAATACAGAGAGTACATAGTGAAAAACGAGGTGGTTCTGAGAGCTGGAGACACCATCAATGAATTTGGTTGGGACAACAAACACGCCGGAATTAACGTTCTCCTTTCTAAGGAGGTTTTGATGGGAAAATCAGATGATTTAAGATCCTTCCAGAATAACGCAGATGGTTTCATATGTTCTTTGTTACCGGGACTTGCTCATCCTCAAGTTCAGTATTCTCCTGGCGGATTGATCTTCAAGGCTGGAGGTAGTAACATGCAGCATGTAACGTCCCTATCTTTCCTGCTCCTGGCCTACTCTAATTATCTAAGCCATGCCAATCATGCTGTTCCATGTGGCCGCCAAACCGCCTCCCCTGCTCTCCTCAAACGCCTAGCCAAACAACAGGTGGACTACATTCTAGGAGATAATCCACTGCGGATGTCCTACATGGTAGGCTACGGTGCACGTTACCCACAGAGAATACATCACAGGGCTAGCTCGTTACCATCCGTTAAGACCCACCCGGCCCGTATAGGATGCAAAGCAGGGTCGCGTTATTACTTGAGCCCAAACCCGAACCCCAATCTGTTGGTGGGGGCTGTGGTAGGTGGGCCCAATAGTAGTGATGCCTTCCCGGACTCCAGGCCTTTCTTTCAGGAATCAGAGCCCACGACGTACATAAATGCTCCGCTGGTGGGCTTGCTCGCGTACTTCTCGGCCCACCCGTAA

Network for GWHGAAZE022538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	36	484	1.60E-138

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.381
	SRR3591706	second leaf	59.983
	SRR3591707	mature leaf	0.638
	SRR3591708	Shoot apex	150.070
	SRR3591709	Stem	20.613
	SRR3591710	White floral bud	21.571
	SRR3591711	White flower	0.645
	SRR3591712	Green floral bud	23.746
	SRR3591713	Yellow flower	0.105
SRP173429	SRR8316895	Juvenile bud stage	1.763
	SRR8316896	Juvenile bud stage	1.645
	SRR8316897	Juvenile bud stage	0.332
	SRR8316894	Third green stage	2.140
	SRR8316900	Third green stage	9.101
	SRR8316901	Third green stage	6.219
	SRR8316898	Complete white stage	1.332
	SRR8316899	Complete white stage	22.315
	SRR8316903	Complete white stage	1.883
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.065
SRP132670	SRR6706286	Control	15.710
	SRR6706287	Light intensity 50%	14.890
	SRR6706288	Light intensity 20%	12.777
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.965
	CNS0095593	Slightly white alabastrum(diploid) 2	8.945
	CNS0095594	Slightly white alabastrum(diploid) 3	3.006
	CNS0095595	Whole white alabastrum(diploid) 2	8.143
	CNS0095596	Whole white alabastrum(diploid) 3	8.229
	CNS0095597	Whole white alabastrum(diploid) 4	7.083
	CNS0095598	Silvery flower (diploied) 1	0.112
	CNS0095599	Silvery flower (diploied) 2	0.281
	CNS0095600	Silvery flower (diploied) 3	0.053
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.046
	CNS0095603	Golden flower (diploid) 3	0.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.978
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.495
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.333
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.204
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.796
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.413
	CNS0095612	Silvery flower (tetraploid) 3	0.115
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	19.837
	CRR073298	Stem 2	21.539
	CRR073299	Stem 3	30.957
	CRR073300	Leaf 1	48.062
	CRR073301	Leaf 2	32.668
	CRR073302	Leaf 3	31.888
	CRR073303	Juvenile bud 1	45.981
	CRR073304	Juvenile bud 2	11.694
	CRR073305	Juvenile bud 3	76.427
	CRR073306	Third green 1	0.525
	CRR073307	Third green 2	1.709
	CRR073308	Third green 3	2.652
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.036
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.536
	CRR073316	Gold flowering 2	0.554
	CRR073317	Gold flowering 3	0.781
	CRR073318	Tawny withering 1	7.698
	CRR073319	Tawny withering 2	5.172
	CRR073320	Tawny withering 3	12.588