Gene detail

Detail information of GWHGAAZE022583

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010674148.1	3.466E-133	PREDICTED: probable ribose-5-phosphate isomerase 2 [Beta vulgaris subsp. vulgaris]
COG	YP_005372594.1	1E-52	ribose-5-phosphate isomerase
Swissprot	tr\|Q9ZU38\|RPI2_ARATH	4E-118	Probable ribose-5-phosphate isomerase 2
trEMBL	tr\|V7BBP5\|V7BBP5_PHAVU	2E-133	Uncharacterized protein {ECO:0000313\|EMBL:ESW15010.1}
TAIR10	AT2G01290.1	3E-94	ribose-5-phosphate isomerase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74916583	74917227	-
GWHAAZE00000006	mRNA	74916583	74917227	-
GWHAAZE00000006	exon	74916583	74917227	-
GWHAAZE00000006	CDS	74916583	74917227	-

Transcript Sequence
>GWHTAAZE022613 ATGGTCTTGGGGTTAGGAACCGGATCTACAGCTTGCCACGCCGTCGATAGGATCGGCGAGCTTTTACGCCAAGGTAAACTCACCAACATTGTCGGCATCCCAACATCTAAGATGACTCACGAACAGGCCTTGTCATTAAACATCCCTTTATCGGACCTCGACACTCATCCGGTCATCGATTTAGCAATCGACGGTGCAGATGAGGTCGACCCCTTTATGAATTTAGTTAAAGGCCGAGGAGGGTCTTTATTAAGGGAAAAGATGGTGGAGGGTGCTTGTAAGAAGTTTGTTGTGATCGTAGATGAGACTAAGCAGGTTAATTATTTAGGGGGTAGTGGGCTAGCTATGCCTGTTGAGATTGTGCCATTTTGTTGGAAATTTACTGCTGAGAGGCTTAGATTGTTGTTTCAGGATTCGGGTTGTGTTGCTAAGCTTAGGACTTTTAGCCGTAACGGTCAGCCTTTTGTTACTGATAATGGTAATTATATTATTGATTTGTATTTCAAGAAAGATATTGGGGATTTGAAGGTTGCTAGTGATGCAATTTTGAGGCTTGCGGGTGTTGTCGAGCATGGTATGTTTCTTGATATGGCAACTACTGTGATTGTGGCCGGTGAGCTTGGTGTCACTGTGAAGAATAAGTAG

Network for GWHGAAZE022583

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06026.15	Rib_5-P_isom_A	31	206	5.80E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01807	rpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0009052	biological_process	pentose-phosphate shunt, non-oxidative branch
GO:0004751	molecular_function	ribose-5-phosphate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.864
	SRR3591706	second leaf	60.253
	SRR3591707	mature leaf	28.728
	SRR3591708	Shoot apex	25.444
	SRR3591709	Stem	29.081
	SRR3591710	White floral bud	24.104
	SRR3591711	White flower	61.159
	SRR3591712	Green floral bud	17.317
	SRR3591713	Yellow flower	73.360
SRP173429	SRR8316895	Juvenile bud stage	31.668
	SRR8316896	Juvenile bud stage	35.629
	SRR8316897	Juvenile bud stage	17.381
	SRR8316894	Third green stage	11.990
	SRR8316900	Third green stage	23.492
	SRR8316901	Third green stage	22.558
	SRR8316898	Complete white stage	7.792
	SRR8316899	Complete white stage	31.542
	SRR8316903	Complete white stage	11.145
	SRR8316902	Silver flowering stage	11.331
	SRR8316904	Silver flowering stage	11.782
	SRR8316905	Silver flowering stage	5.613
	SRR8316906	Gold flowering stage	15.865
	SRR8316907	Gold flowering stage	23.557
	SRR8316908	Gold flowering stage	26.972
SRP132670	SRR6706286	Control	35.961
	SRR6706287	Light intensity 50%	30.844
	SRR6706288	Light intensity 20%	29.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.298
	CNS0095593	Slightly white alabastrum(diploid) 2	39.210
	CNS0095594	Slightly white alabastrum(diploid) 3	44.585
	CNS0095595	Whole white alabastrum(diploid) 2	32.925
	CNS0095596	Whole white alabastrum(diploid) 3	19.391
	CNS0095597	Whole white alabastrum(diploid) 4	24.190
	CNS0095598	Silvery flower (diploied) 1	39.900
	CNS0095599	Silvery flower (diploied) 2	45.451
	CNS0095600	Silvery flower (diploied) 3	37.236
	CNS0095601	Golden flower (diploid) 1	29.121
	CNS0095602	Golden flower (diploid) 2	44.200
	CNS0095603	Golden flower (diploid) 3	41.436
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.840
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.310
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.233
	CNS0095610	Silvery flower (tetraploid) 1	39.167
	CNS0095611	Silvery flower (tetraploid) 2	28.314
	CNS0095612	Silvery flower (tetraploid) 3	9.211
	CNS0095613	Golden flower (tetraploid) 1	30.620
	CNS0095614	Golden flower (tetraploid) 2	48.888
	CNS0095615	Golden flower (tetraploid) 3	24.540
CRA001975	CRR073297	Stem 1	55.526
	CRR073298	Stem 2	53.387
	CRR073299	Stem 3	89.211
	CRR073300	Leaf 1	22.856
	CRR073301	Leaf 2	32.052
	CRR073302	Leaf 3	30.044
	CRR073303	Juvenile bud 1	27.076
	CRR073304	Juvenile bud 2	21.109
	CRR073305	Juvenile bud 3	55.187
	CRR073306	Third green 1	9.524
	CRR073307	Third green 2	9.044
	CRR073308	Third green 3	14.661
	CRR073309	Second white 1	8.343
	CRR073310	Second white 2	9.982
	CRR073311	Second white 3	6.606
	CRR073312	Silver flowering 1	19.710
	CRR073313	Silver flowering 2	28.870
	CRR073314	Silver flowering 3	24.310
	CRR073315	Gold flowering 1	48.816
	CRR073316	Gold flowering 2	50.133
	CRR073317	Gold flowering 3	64.285
	CRR073318	Tawny withering 1	37.630
	CRR073319	Tawny withering 2	49.631
	CRR073320	Tawny withering 3	49.147