Gene detail

Detail information of GWHGAAZE022589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007044066.1	0	Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
trEMBL	tr\|A0A061E5I6\|A0A061E5I6_THECC	0	Tetratricopeptide repeat-like superfamily protein {ECO:0000313\|EMBL:EOX99897.1}
TAIR10	AT3G04240.1	0.0001	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74997937	75004417	+
GWHAAZE00000006	mRNA	74997937	75004417	+
GWHAAZE00000006	exon	74997937	74998126	+
GWHAAZE00000006	exon	74999165	74999274	+
GWHAAZE00000006	exon	74999375	74999485	+
GWHAAZE00000006	exon	74999634	74999691	+
GWHAAZE00000006	exon	75000451	75000540	+
GWHAAZE00000006	exon	75001126	75001220	+
GWHAAZE00000006	exon	75001357	75001410	+
GWHAAZE00000006	exon	75001895	75001969	+
GWHAAZE00000006	exon	75002655	75002712	+
GWHAAZE00000006	exon	75002820	75002934	+
GWHAAZE00000006	exon	75003352	75003421	+
GWHAAZE00000006	exon	75004023	75004094	+
GWHAAZE00000006	exon	75004301	75004417	+
GWHAAZE00000006	CDS	74997937	74998126	+
GWHAAZE00000006	CDS	74999165	74999274	+
GWHAAZE00000006	CDS	74999375	74999485	+
GWHAAZE00000006	CDS	74999634	74999691	+
GWHAAZE00000006	CDS	75000451	75000540	+
GWHAAZE00000006	CDS	75001126	75001220	+
GWHAAZE00000006	CDS	75001357	75001410	+
GWHAAZE00000006	CDS	75001895	75001969	+
GWHAAZE00000006	CDS	75002655	75002712	+
GWHAAZE00000006	CDS	75002820	75002934	+
GWHAAZE00000006	CDS	75003352	75003421	+
GWHAAZE00000006	CDS	75004023	75004094	+
GWHAAZE00000006	CDS	75004301	75004417	+

Transcript Sequence
>GWHTAAZE022619 ATGAACAGTCAAAAACAAGGTGAAGAAGGAGGAGTTGTAGTAGCAGATTTAATGGCGCAGGTTGCAAAGGCGGCCGATGATCTATACAACATTCGAGACACTTACTTTCCTCTAGATCCAGATGACAAAATCTCCAAATTGCAACGACACTCTGATCTCGCCCTCAAGCTCCTCGATTCTATTCCCCCTGAACAAAGGAAACTTCCAATGCAACGAGCGACACATGAGTATTTGAGAGGAAAGGTGTTGGATGTATTCACTGACTATAGGAAAGAAGCAGAAGATCATCTCTCAAAGGCTGTTAAGTTGAATCCATCTCTTGCAGATGCTTGGCTATGCTTAGGTAACTGCATTTGGAAGAAAGGAGAGCTAGCTTCAGCAAAGAACTGCTTTACCCTTGCACTAAGCAAGGGTCCAAACAAAAGGATACTTTGTCAATTATCAATGCTTGAAAGAAGAATGGCTCAAGGTGCTGATAATCAAGCAGAAATTGTTGAAGAAAGCATCAAGCATGCAAAAGAAGCTATAGCTCTGGATGTCAAAGATGGGAATTCTTGGTACAACCTAGGAAATGCATGCCTCACATGCTTCTTTGTGACTGGAGCATGGGATCATAGCAAACTTCTGCAGTCACTAAAAGCATACCAAAATGCTGAGAAAGATGAGAGAATGCTGTCCAATCCAGATCTATATTTTAACTGTGCTACTGATCCTGGTCTCAATGCTACGGAGGAAGTTCAAAAGATGGTCAACCTTCTTGGCAAGTTAGACAATTTGTTAAAGGGACAGACCAAGGCTAAAAGACTTGCTTCCTTGGCATCATCACTAACCGGCGTCAGTTTGAATCCTTCGTATCAAAGAACCACTATAGATTGTCTAGTTGAAGGTTTAAACAAAACAGTTGCCCTTGTTGCAAAAGTTGTATTCTTCATCAGGCATGAGAATGTTGCTCCCTTATACTATCTGGCATGTGATTCAAATCAACTCTGCTTTGTTCTCACTGTGTATGAGATTCGCAATGATGCTATTAAAGAAGGGGATCAGGTGACCATATTGGAACCTAATTATCGTTCCGTTGATTTTTCGTGGAAAGAGAAGCATTACCAGTTCAAATCAATCCGTGTGGATTTCCTAGAACAAGTGCTTGTGAATGGAAAATCCTTGTCCCCAGATCATGCAGTTCGAACATCAATTTACGCTCAACATATGCCGTGA

Network for GWHGAAZE022589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16669.6	TTC5_OB	285	396	3.50E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.070
	SRR3591706	second leaf	25.336
	SRR3591707	mature leaf	23.574
	SRR3591708	Shoot apex	30.974
	SRR3591709	Stem	36.203
	SRR3591710	White floral bud	20.846
	SRR3591711	White flower	18.775
	SRR3591712	Green floral bud	18.645
	SRR3591713	Yellow flower	15.538
SRP173429	SRR8316895	Juvenile bud stage	11.777
	SRR8316896	Juvenile bud stage	20.418
	SRR8316897	Juvenile bud stage	9.530
	SRR8316894	Third green stage	7.973
	SRR8316900	Third green stage	19.640
	SRR8316901	Third green stage	16.703
	SRR8316898	Complete white stage	8.476
	SRR8316899	Complete white stage	26.439
	SRR8316903	Complete white stage	15.259
	SRR8316902	Silver flowering stage	6.419
	SRR8316904	Silver flowering stage	9.450
	SRR8316905	Silver flowering stage	4.540
	SRR8316906	Gold flowering stage	14.029
	SRR8316907	Gold flowering stage	12.710
	SRR8316908	Gold flowering stage	14.218
SRP132670	SRR6706286	Control	7.018
	SRR6706287	Light intensity 50%	8.698
	SRR6706288	Light intensity 20%	8.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.103
	CNS0095593	Slightly white alabastrum(diploid) 2	17.566
	CNS0095594	Slightly white alabastrum(diploid) 3	15.644
	CNS0095595	Whole white alabastrum(diploid) 2	12.423
	CNS0095596	Whole white alabastrum(diploid) 3	9.354
	CNS0095597	Whole white alabastrum(diploid) 4	14.416
	CNS0095598	Silvery flower (diploied) 1	19.200
	CNS0095599	Silvery flower (diploied) 2	14.776
	CNS0095600	Silvery flower (diploied) 3	14.900
	CNS0095601	Golden flower (diploid) 1	17.925
	CNS0095602	Golden flower (diploid) 2	15.494
	CNS0095603	Golden flower (diploid) 3	13.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.529
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.918
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.496
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.723
	CNS0095610	Silvery flower (tetraploid) 1	18.806
	CNS0095611	Silvery flower (tetraploid) 2	15.094
	CNS0095612	Silvery flower (tetraploid) 3	9.184
	CNS0095613	Golden flower (tetraploid) 1	9.211
	CNS0095614	Golden flower (tetraploid) 2	17.165
	CNS0095615	Golden flower (tetraploid) 3	4.877
CRA001975	CRR073297	Stem 1	14.328
	CRR073298	Stem 2	11.274
	CRR073299	Stem 3	4.941
	CRR073300	Leaf 1	15.030
	CRR073301	Leaf 2	9.993
	CRR073302	Leaf 3	7.543
	CRR073303	Juvenile bud 1	8.140
	CRR073304	Juvenile bud 2	6.902
	CRR073305	Juvenile bud 3	9.352
	CRR073306	Third green 1	1.856
	CRR073307	Third green 2	2.358
	CRR073308	Third green 3	1.683
	CRR073309	Second white 1	2.176
	CRR073310	Second white 2	2.241
	CRR073311	Second white 3	1.372
	CRR073312	Silver flowering 1	0.727
	CRR073313	Silver flowering 2	1.452
	CRR073314	Silver flowering 3	0.856
	CRR073315	Gold flowering 1	7.893
	CRR073316	Gold flowering 2	10.509
	CRR073317	Gold flowering 3	4.545
	CRR073318	Tawny withering 1	16.575
	CRR073319	Tawny withering 2	14.297
	CRR073320	Tawny withering 3	11.301