Detail information of GWHGAAZE022591


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004238867.10PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum lycopersicum]
COGYP_004357703.10ATP synthase subunit beta
Swissprottr|P17614|ATPBM_NICPL0ATP synthase subunit beta, mitochondrial (Precursor)
trEMBLtr|K4BX20|K4BX20_SOLLC0ATP synthase subunit beta {ECO:0000256|RuleBase:RU003553}
TAIR10AT5G08680.10ATP synthase alpha/beta family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7502032175023734-
GWHAAZE00000006mRNA7502032175023734-
GWHAAZE00000006exon7502032175020434-
GWHAAZE00000006exon7502085275021163-
GWHAAZE00000006exon7502124475021468-
GWHAAZE00000006exon7502154575021703-
GWHAAZE00000006exon7502180475021907-
GWHAAZE00000006exon7502199875022115-
GWHAAZE00000006exon7502220975022297-
GWHAAZE00000006exon7502238475022459-
GWHAAZE00000006exon7502325875023734-
GWHAAZE00000006CDS7502325875023734-
GWHAAZE00000006CDS7502238475022459-
GWHAAZE00000006CDS7502220975022297-
GWHAAZE00000006CDS7502199875022115-
GWHAAZE00000006CDS7502180475021907-
GWHAAZE00000006CDS7502154575021703-
GWHAAZE00000006CDS7502124475021468-
GWHAAZE00000006CDS7502085275021163-
GWHAAZE00000006CDS7502032175020434-
Transcript Sequence

Network for GWHGAAZE022591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11421.9Synthase_beta1482.20E-15
PF02874.24ATP-synt_ab_N891558.20E-21
PF00006.26ATP-synt_ab2124332.50E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02133ATPeF1B, ATP5B, ATP2 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0006754biological_processATP biosynthetic process
GO:0015986biological_processATP synthesis coupled proton transport
GO:0000275cellular_componentmitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf102.059
SRR3591706second leaf43.232
SRR3591707mature leaf34.748
SRR3591708Shoot apex85.894
SRR3591709Stem74.585
SRR3591710White floral bud77.204
SRR3591711White flower97.219
SRR3591712Green floral bud99.596
SRR3591713Yellow flower105.432
SRP173429 SRR8316895Juvenile bud stage 62.828
SRR8316896Juvenile bud stage 92.349
SRR8316897Juvenile bud stage 39.880
SRR8316894Third green stage 37.037
SRR8316900Third green stage 160.872
SRR8316901Third green stage 130.608
SRR8316898Complete white stage 45.734
SRR8316899Complete white stage 133.745
SRR8316903Complete white stage 70.336
SRR8316902Silver flowering stage42.646
SRR8316904Silver flowering stage53.921
SRR8316905Silver flowering stage31.826
SRR8316906Gold flowering stage 111.580
SRR8316907Gold flowering stage 112.811
SRR8316908Gold flowering stage 126.692
SRP132670SRR6706286Control95.299
SRR6706287Light intensity 50%104.636
SRR6706288Light intensity 20%111.102
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.177
CNS0095593Slightly white alabastrum(diploid) 259.236
CNS0095594Slightly white alabastrum(diploid) 359.379
CNS0095595Whole white alabastrum(diploid) 263.034
CNS0095596Whole white alabastrum(diploid) 374.095
CNS0095597Whole white alabastrum(diploid) 459.966
CNS0095598Silvery flower (diploied) 149.684
CNS0095599Silvery flower (diploied) 243.800
CNS0095600Silvery flower (diploied) 3114.909
CNS0095601Golden flower (diploid) 144.051
CNS0095602Golden flower (diploid) 2104.079
CNS0095603Golden flower (diploid) 399.689
CNS0095604Slightly white alabastrum(tetraploid) 182.528
CNS0095605Slightly white alabastrum(tetraploid) 266.511
CNS0095606Slightly white alabastrum(tetraploid) 3115.901
CNS0095607Whole white alabastrum(tetraploid) 163.622
CNS0095608Whole white alabastrum(tetraploid) 261.428
CNS0095609Whole white alabastrum(tetraploid) 3127.575
CNS0095610Silvery flower (tetraploid) 1110.601
CNS0095611Silvery flower (tetraploid) 2137.894
CNS0095612Silvery flower (tetraploid) 3150.137
CNS0095613Golden flower (tetraploid) 170.754
CNS0095614Golden flower (tetraploid) 2123.789
CNS0095615Golden flower (tetraploid) 3119.323
CRA001975CRR073297Stem 1128.462
CRR073298Stem 2123.859
CRR073299Stem 3133.319
CRR073300Leaf 1175.542
CRR073301Leaf 2164.949
CRR073302Leaf 3200.195
CRR073303Juvenile bud 1225.986
CRR073304Juvenile bud 2208.404
CRR073305Juvenile bud 3215.983
CRR073306Third green 198.896
CRR073307Third green 273.498
CRR073308Third green 384.103
CRR073309Second white 1224.796
CRR073310Second white 2144.214
CRR073311Second white 3145.094
CRR073312Silver flowering 1156.119
CRR073313Silver flowering 2178.735
CRR073314Silver flowering 3148.705
CRR073315Gold flowering 137.408
CRR073316Gold flowering 247.878
CRR073317Gold flowering 351.282
CRR073318Tawny withering 186.149
CRR073319Tawny withering 260.376
CRR073320Tawny withering 379.691