Detail information of GWHGAAZE022596


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010279411.10PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 [Nelumbo nucifera]
Swissprottr|F4HXY7|PSS1_ARATH0CDP-diacylglycerol--serine O-phosphatidyltransferase 1
trEMBLtr|A0A061E4I8|A0A061E4I8_THECC0Phosphatidyl serine synthase family protein isoform 1 {ECO:0000313|EMBL:EOX99944.1}
TAIR10AT1G15110.10phosphatidyl serine synthase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7506646875071808-
GWHAAZE00000006mRNA7506646875071808-
GWHAAZE00000006exon7507171775071808-
GWHAAZE00000006exon7507088475071066-
GWHAAZE00000006exon7507015475070219-
GWHAAZE00000006exon7506998875070047-
GWHAAZE00000006exon7506975575069845-
GWHAAZE00000006exon7506930775069361-
GWHAAZE00000006exon7506906775069146-
GWHAAZE00000006exon7506882275068938-
GWHAAZE00000006exon7506862575068709-
GWHAAZE00000006exon7506822475068315-
GWHAAZE00000006exon7506707275067325-
GWHAAZE00000006exon7506684675066934-
GWHAAZE00000006exon7506646875066761-
GWHAAZE00000006CDS7507171775071808-
GWHAAZE00000006CDS7507088475071066-
GWHAAZE00000006CDS7507015475070219-
GWHAAZE00000006CDS7506998875070047-
GWHAAZE00000006CDS7506975575069845-
GWHAAZE00000006CDS7506930775069361-
GWHAAZE00000006CDS7506906775069146-
GWHAAZE00000006CDS7506882275068938-
GWHAAZE00000006CDS7506862575068709-
GWHAAZE00000006CDS7506822475068315-
GWHAAZE00000006CDS7506707275067325-
GWHAAZE00000006CDS7506684675066934-
GWHAAZE00000006CDS7506662875066761-
GWHAAZE00000006three_prime_UTR7506646875066627-
Transcript Sequence

Network for GWHGAAZE022596

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03034.16PSS1394192.00E-111
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08730PTDSS2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0006659biological_processphosphatidylserine biosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.048
SRR3591706second leaf17.250
SRR3591707mature leaf14.720
SRR3591708Shoot apex25.974
SRR3591709Stem23.227
SRR3591710White floral bud11.899
SRR3591711White flower11.297
SRR3591712Green floral bud20.948
SRR3591713Yellow flower8.137
SRP173429 SRR8316895Juvenile bud stage 9.842
SRR8316896Juvenile bud stage 18.003
SRR8316897Juvenile bud stage 8.805
SRR8316894Third green stage 8.551
SRR8316900Third green stage 14.398
SRR8316901Third green stage 18.201
SRR8316898Complete white stage 4.346
SRR8316899Complete white stage 24.717
SRR8316903Complete white stage 8.364
SRR8316902Silver flowering stage4.320
SRR8316904Silver flowering stage5.805
SRR8316905Silver flowering stage2.561
SRR8316906Gold flowering stage 9.536
SRR8316907Gold flowering stage 10.744
SRR8316908Gold flowering stage 10.358
SRP132670SRR6706286Control9.738
SRR6706287Light intensity 50%11.664
SRR6706288Light intensity 20%12.795
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.207
CNS0095593Slightly white alabastrum(diploid) 221.900
CNS0095594Slightly white alabastrum(diploid) 315.881
CNS0095595Whole white alabastrum(diploid) 215.882
CNS0095596Whole white alabastrum(diploid) 39.606
CNS0095597Whole white alabastrum(diploid) 413.254
CNS0095598Silvery flower (diploied) 18.724
CNS0095599Silvery flower (diploied) 29.089
CNS0095600Silvery flower (diploied) 36.690
CNS0095601Golden flower (diploid) 17.640
CNS0095602Golden flower (diploid) 27.968
CNS0095603Golden flower (diploid) 36.454
CNS0095604Slightly white alabastrum(tetraploid) 116.712
CNS0095605Slightly white alabastrum(tetraploid) 213.975
CNS0095606Slightly white alabastrum(tetraploid) 331.772
CNS0095607Whole white alabastrum(tetraploid) 113.744
CNS0095608Whole white alabastrum(tetraploid) 211.180
CNS0095609Whole white alabastrum(tetraploid) 310.191
CNS0095610Silvery flower (tetraploid) 17.903
CNS0095611Silvery flower (tetraploid) 26.470
CNS0095612Silvery flower (tetraploid) 38.743
CNS0095613Golden flower (tetraploid) 15.760
CNS0095614Golden flower (tetraploid) 25.845
CNS0095615Golden flower (tetraploid) 35.196
CRA001975CRR073297Stem 117.680
CRR073298Stem 216.151
CRR073299Stem 36.412
CRR073300Leaf 119.558
CRR073301Leaf 220.311
CRR073302Leaf 38.472
CRR073303Juvenile bud 111.028
CRR073304Juvenile bud 25.513
CRR073305Juvenile bud 313.866
CRR073306Third green 12.715
CRR073307Third green 22.491
CRR073308Third green 32.139
CRR073309Second white 13.193
CRR073310Second white 21.442
CRR073311Second white 32.557
CRR073312Silver flowering 13.701
CRR073313Silver flowering 23.938
CRR073314Silver flowering 32.105
CRR073315Gold flowering 13.398
CRR073316Gold flowering 24.618
CRR073317Gold flowering 32.834
CRR073318Tawny withering 17.880
CRR073319Tawny withering 29.040
CRR073320Tawny withering 310.324