Detail information of GWHGAAZE022603


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283507.12.72269E-53PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera]
Swissprottr|Q9ZT50|RHA2A_ARATH2E-30E3 ubiquitin-protein ligase RHA2A
trEMBLtr|A0A067KFU7|A0A067KFU7_JATCU1E-46Uncharacterized protein {ECO:0000313|EMBL:KDP35007.1}
TAIR10AT1G15100.15E-25RING-H2 finger A2A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7516813875168488+
GWHAAZE00000006mRNA7516813875168488+
GWHAAZE00000006exon7516813875168488+
GWHAAZE00000006CDS7516813875168488+
Transcript Sequence

Network for GWHGAAZE022603

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_246894.50E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.242
SRR3591706second leaf3.418
SRR3591707mature leaf27.934
SRR3591708Shoot apex3.064
SRR3591709Stem13.108
SRR3591710White floral bud8.307
SRR3591711White flower28.212
SRR3591712Green floral bud4.573
SRR3591713Yellow flower11.240
SRP173429 SRR8316895Juvenile bud stage 1.878
SRR8316896Juvenile bud stage 2.777
SRR8316897Juvenile bud stage 3.469
SRR8316894Third green stage 1.842
SRR8316900Third green stage 5.575
SRR8316901Third green stage 6.245
SRR8316898Complete white stage 2.829
SRR8316899Complete white stage 5.322
SRR8316903Complete white stage 3.915
SRR8316902Silver flowering stage4.560
SRR8316904Silver flowering stage5.237
SRR8316905Silver flowering stage2.025
SRR8316906Gold flowering stage 4.988
SRR8316907Gold flowering stage 4.261
SRR8316908Gold flowering stage 6.844
SRP132670SRR6706286Control3.063
SRR6706287Light intensity 50%3.225
SRR6706288Light intensity 20%3.210
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.403
CNS0095593Slightly white alabastrum(diploid) 214.001
CNS0095594Slightly white alabastrum(diploid) 313.652
CNS0095595Whole white alabastrum(diploid) 29.030
CNS0095596Whole white alabastrum(diploid) 39.055
CNS0095597Whole white alabastrum(diploid) 48.644
CNS0095598Silvery flower (diploied) 123.338
CNS0095599Silvery flower (diploied) 25.156
CNS0095600Silvery flower (diploied) 38.857
CNS0095601Golden flower (diploid) 16.751
CNS0095602Golden flower (diploid) 210.461
CNS0095603Golden flower (diploid) 34.909
CNS0095604Slightly white alabastrum(tetraploid) 112.864
CNS0095605Slightly white alabastrum(tetraploid) 213.402
CNS0095606Slightly white alabastrum(tetraploid) 38.127
CNS0095607Whole white alabastrum(tetraploid) 110.033
CNS0095608Whole white alabastrum(tetraploid) 26.559
CNS0095609Whole white alabastrum(tetraploid) 33.480
CNS0095610Silvery flower (tetraploid) 116.210
CNS0095611Silvery flower (tetraploid) 26.822
CNS0095612Silvery flower (tetraploid) 313.332
CNS0095613Golden flower (tetraploid) 15.352
CNS0095614Golden flower (tetraploid) 211.611
CNS0095615Golden flower (tetraploid) 34.953
CRA001975CRR073297Stem 122.220
CRR073298Stem 219.186
CRR073299Stem 335.339
CRR073300Leaf 126.026
CRR073301Leaf 228.617
CRR073302Leaf 325.399
CRR073303Juvenile bud 121.246
CRR073304Juvenile bud 218.729
CRR073305Juvenile bud 325.439
CRR073306Third green 135.035
CRR073307Third green 246.247
CRR073308Third green 331.209
CRR073309Second white 141.637
CRR073310Second white 225.393
CRR073311Second white 310.672
CRR073312Silver flowering 112.256
CRR073313Silver flowering 229.565
CRR073314Silver flowering 316.238
CRR073315Gold flowering 123.598
CRR073316Gold flowering 223.295
CRR073317Gold flowering 335.091
CRR073318Tawny withering 135.702
CRR073319Tawny withering 224.501
CRR073320Tawny withering 338.363