Gene detail

Detail information of GWHGAAZE022614

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN11389.1	1.1521E-105	Putative serine/threonine-protein kinase [Glycine soja]
COG	YP_002763346.1	1E-10	putative serine/threonine protein kinase
Swissprot	tr\|P0C5E2\|Y1839_ARATH	8E-65	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A5C0P3\|A5C0P3_VITVI	2E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81685.1}
TAIR10	AT1G25390.1	5E-58	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75372140	75374182	+
GWHAAZE00000006	mRNA	75372140	75374182	+
GWHAAZE00000006	exon	75372140	75372332	+
GWHAAZE00000006	exon	75372491	75372526	+
GWHAAZE00000006	exon	75372656	75372883	+
GWHAAZE00000006	exon	75373311	75373609	+
GWHAAZE00000006	exon	75373838	75374182	+
GWHAAZE00000006	CDS	75372140	75372332	+
GWHAAZE00000006	CDS	75372491	75372526	+
GWHAAZE00000006	CDS	75372656	75372883	+
GWHAAZE00000006	CDS	75373311	75373609	+
GWHAAZE00000006	CDS	75373838	75374182	+

Transcript Sequence
>GWHTAAZE022644 ATGGATACTCTTCCCCAAGGCTGCTCAGTTGTTCAATTGCCGGTGAAACCACACCACCAGCCACTTCAATTAGTAACCTTCACCTTCAACCTCAGTTTGCAAGTGTCTGCTGATTGTTCCGATTGCCCTAATAAGGGAGGGAAGTGTGAAACTGACAAGTTGAATAAATCTCAGTGCGCCAACCTAAAACAAGATCATGGAAGCAAATCAATAGTGATTCTAGCCTCCGTTTTACCCGGAGGGTTCATCATTATAATTTCCATTATCATCTTCATTATTTGGCGTCACAAGAAACGGAACAAGTCCTCTGATCTCTCCTCCTCAGCACGTAACCTAGAAGGTGGTGATAGCTACTTTAGTGTACCCGTCTTCCCCTACAGTGTACTTGAAGAAGCCACAAACAATTTTGACCCTTCCAAAGAACTAGGAGATGGAGGTTTTGGCACCGTCTACCATGGTATACTAAGAGATGGGCGGGAAGTTGCAGTCAAGCGTCTATACAAGAACAACTGCAAGCGAGTGGAGCAGTTCATGAACGAGATCGAAATCCTCACACGTTTATGCCACCCTAATCTTGTCCTACTTTACGGCTGCACCTCTCGTGACAGCACGGAGCTGCTCCTCATCTATGAGTACACTCCCAATGGCACCGTAGCCGATCACCTCCACGGAAATCGAGCAAAAAACGGTTCGCTTACATGGCCTATTCGCATGAACATTGCCATAGAGACTGCCAGTGCCTTATCCTACCTCCACCTTATATCTTCGATGCCAGCCGTTGATATAAGTAGGCATAGGCACGAGATTAATTTGGCTAACTTGGCAATAAATAGGATCCAAAGATGCGCATTCAACGAGTTGATTGACCCGTTTCTCGGGTATGAGTCGGATGCTAAGGTTGAGAGGATGACTAGTTCCGTAGCAGAATTAGCTTTTCGGTGCTTACAACTTGATAAGGAAATGAGGCCTACAATGGATGAGGTATTGGAGACTTTGAAGGACATTCGGGATTATGACAGCAAAGTTGATAAAAATGTAAGGCCGATGCCTTCGCTTAAATCCGAAGGTGCTGTATTGCTTACAACTGCTAAGTTTCAATAA

Network for GWHGAAZE022614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0157

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	139	252	1.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK_LRK10L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.681
	SRR3591706	second leaf	2.421
	SRR3591707	mature leaf	9.730
	SRR3591708	Shoot apex	1.484
	SRR3591709	Stem	12.419
	SRR3591710	White floral bud	10.062
	SRR3591711	White flower	30.914
	SRR3591712	Green floral bud	2.212
	SRR3591713	Yellow flower	27.317
SRP173429	SRR8316895	Juvenile bud stage	8.537
	SRR8316896	Juvenile bud stage	6.757
	SRR8316897	Juvenile bud stage	4.736
	SRR8316894	Third green stage	1.127
	SRR8316900	Third green stage	0.708
	SRR8316901	Third green stage	2.847
	SRR8316898	Complete white stage	2.226
	SRR8316899	Complete white stage	9.741
	SRR8316903	Complete white stage	3.960
	SRR8316902	Silver flowering stage	4.456
	SRR8316904	Silver flowering stage	3.314
	SRR8316905	Silver flowering stage	2.593
	SRR8316906	Gold flowering stage	22.356
	SRR8316907	Gold flowering stage	11.751
	SRR8316908	Gold flowering stage	19.758
SRP132670	SRR6706286	Control	2.689
	SRR6706287	Light intensity 50%	3.238
	SRR6706288	Light intensity 20%	2.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.906
	CNS0095593	Slightly white alabastrum(diploid) 2	5.090
	CNS0095594	Slightly white alabastrum(diploid) 3	7.370
	CNS0095595	Whole white alabastrum(diploid) 2	3.362
	CNS0095596	Whole white alabastrum(diploid) 3	1.914
	CNS0095597	Whole white alabastrum(diploid) 4	4.488
	CNS0095598	Silvery flower (diploied) 1	16.153
	CNS0095599	Silvery flower (diploied) 2	18.151
	CNS0095600	Silvery flower (diploied) 3	25.714
	CNS0095601	Golden flower (diploid) 1	21.489
	CNS0095602	Golden flower (diploid) 2	38.848
	CNS0095603	Golden flower (diploid) 3	33.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.647
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.203
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.174
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.189
	CNS0095610	Silvery flower (tetraploid) 1	12.255
	CNS0095611	Silvery flower (tetraploid) 2	8.398
	CNS0095612	Silvery flower (tetraploid) 3	12.294
	CNS0095613	Golden flower (tetraploid) 1	11.209
	CNS0095614	Golden flower (tetraploid) 2	13.052
	CNS0095615	Golden flower (tetraploid) 3	3.809
CRA001975	CRR073297	Stem 1	1.518
	CRR073298	Stem 2	1.984
	CRR073299	Stem 3	0.836
	CRR073300	Leaf 1	1.526
	CRR073301	Leaf 2	3.795
	CRR073302	Leaf 3	1.675
	CRR073303	Juvenile bud 1	0.990
	CRR073304	Juvenile bud 2	4.534
	CRR073305	Juvenile bud 3	4.294
	CRR073306	Third green 1	2.771
	CRR073307	Third green 2	1.367
	CRR073308	Third green 3	2.326
	CRR073309	Second white 1	9.735
	CRR073310	Second white 2	9.312
	CRR073311	Second white 3	8.581
	CRR073312	Silver flowering 1	31.364
	CRR073313	Silver flowering 2	34.181
	CRR073314	Silver flowering 3	29.767
	CRR073315	Gold flowering 1	10.976
	CRR073316	Gold flowering 2	20.273
	CRR073317	Gold flowering 3	28.404
	CRR073318	Tawny withering 1	13.404
	CRR073319	Tawny withering 2	21.215
	CRR073320	Tawny withering 3	8.971