Gene detail

Detail information of GWHGAAZE022623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283636.1	0	PREDICTED: glutamine--tRNA ligase [Vitis vinifera]
COG	YP_826253.1	2E-135	glutaminyl-tRNA synthetase
Swissprot	tr\|P52780\|SYQ_LUPLU	0	Glutamine--tRNA ligase
trEMBL	tr\|D7T929\|D7T929_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27000.3}
TAIR10	AT1G25350.1	0	glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75583065	75591137	+
GWHAAZE00000006	mRNA	75583065	75591137	+
GWHAAZE00000006	exon	75583065	75583071	+
GWHAAZE00000006	exon	75583192	75583253	+
GWHAAZE00000006	exon	75583591	75583692	+
GWHAAZE00000006	exon	75583791	75583883	+
GWHAAZE00000006	exon	75584396	75584548	+
GWHAAZE00000006	exon	75584640	75584695	+
GWHAAZE00000006	exon	75585154	75585244	+
GWHAAZE00000006	exon	75585317	75585403	+
GWHAAZE00000006	exon	75585530	75585699	+
GWHAAZE00000006	exon	75587663	75587795	+
GWHAAZE00000006	exon	75587903	75588039	+
GWHAAZE00000006	exon	75588122	75588221	+
GWHAAZE00000006	exon	75588301	75588396	+
GWHAAZE00000006	exon	75588477	75588577	+
GWHAAZE00000006	exon	75588687	75588792	+
GWHAAZE00000006	exon	75589158	75589247	+
GWHAAZE00000006	exon	75589324	75589453	+
GWHAAZE00000006	exon	75589986	75590079	+
GWHAAZE00000006	exon	75591080	75591137	+
GWHAAZE00000006	CDS	75583065	75583071	+
GWHAAZE00000006	CDS	75583192	75583253	+
GWHAAZE00000006	CDS	75583591	75583692	+
GWHAAZE00000006	CDS	75583791	75583883	+
GWHAAZE00000006	CDS	75584396	75584548	+
GWHAAZE00000006	CDS	75584640	75584695	+
GWHAAZE00000006	CDS	75585154	75585244	+
GWHAAZE00000006	CDS	75585317	75585403	+
GWHAAZE00000006	CDS	75585530	75585699	+
GWHAAZE00000006	CDS	75587663	75587795	+
GWHAAZE00000006	CDS	75587903	75588039	+
GWHAAZE00000006	CDS	75588122	75588221	+
GWHAAZE00000006	CDS	75588301	75588396	+
GWHAAZE00000006	CDS	75588477	75588577	+
GWHAAZE00000006	CDS	75588687	75588792	+
GWHAAZE00000006	CDS	75589158	75589247	+
GWHAAZE00000006	CDS	75589324	75589453	+
GWHAAZE00000006	CDS	75589986	75590079	+
GWHAAZE00000006	CDS	75591080	75591137	+

Transcript Sequence
>GWHTAAZE022653 ATGAGTGTTGGTGAACTATTTGCTCATGTGCGAAAGAGGCAGCCATGGGCCGATCCAAAGATCGTCAAGAAACTTATAGATGCAAAGTTATATGAGTTACTTGGTGAAAAGACTGCAGCAGATGAGGAGAAGCCTGTGAAAAAGAAGAAAGAGAAGCCTGTTAAAATTGAGAATAAACCTGTTGAAGCTACTCCTCCCCCGAAACAATCTGAAGAGGAGCTCAATCCATATTTGATATTCCCTTCACCGGAGGAAAATTTTAAGGTGCATACTGAAATATTTTTCAGCGATCGACCAGTGCTCAGAGCCTGTAATTCCAAGGAATTGCTTGAAAAACATTTGAAGGTTACAGGAGGAAAAGTTTTAACCCGATTTCCACCAGAACCAAATGGATATCTGCATATAGGTCATGCCAAGGCTATGTTTGTTGACTTTGGCCTGGCAAAAGAAAGAGGTGGAGGCTGCTACTTGAGGTATGATGATACAAACCCTGAAGCCGAGAAGAAAGAATATATAGATCATATTGAAGAAATTGTACGATGGATGGGTTGGGAACCGTTCAAGATCACTTACACCAGTAATTACTTCCAAGAACTTCATGATCTAGCAGTGGAGCTGATACGAAGGGGCCATGCTTATGTTGATCATCAGACACCTGATGAGATAAAGGAGTACAGGGAAAAAAAGATGAACAGTCCTTGGAGAGATCGACCAATTGCAGAATCACTGAAACTGTTTGATGATATGAAACGAGGCATGATTGAAGAAGGGAAAGCAACACTGAGACTGAAACAGGATATGCAGAGTGACAATTACAATATCTCTGTACACTTGAATTTGAGACTCGTCAGGGCTTCCTATTACTGGCTATTGGATGCTCTAGGCCTTTACCAACCTTTTGTATGGGAGTACTCGCGCTTGAATATCACCAACACAGTGATGTCAAAGCGTAAGCTGAACCGTCTTGTGACAGAAAACTGGGTTGATGGTTGGGATGATCCTCGGCTAATGACATTAGCTGGACTAAGGCGTAGAGGGGTTACTTCAACTTCAATCAATGCTTTTGCTCGAGGGATAGGAATTACTAGAAGTGATAGTAGTATAATACAATTGGAACGCCTGGAGTACCATGTAAGAGAAGAACTAAATAAAACAGCACCTCGCACTATGGTTGTTTTAAATCCACTCAAGGTTGTTATAACCAACCTGGAAGCAGGGTCAGTGATGGATCTTGATGCAAAGAAATGGCCCGATGCTCAAACAGATGACTCATCTTCTTTTTATAAGGTTCCTTTTACCAATGTTGTATACATTGAGCAAACCGATTTTCGGATGAAAGATTCCAAAGATTACTATGGGCTTGCTCCTGGAAAGTCTGTCCTACTAAGATATGCATTTCCTATAAAGTGCACTGAAGTAATTTTTGGAGATGATAAAGAGACCGTTCTTGAGATTCGAGCTGAGTATGATCCTTCAAAGAAGACAAAACCAAAGGGGGTTCTTCATTGGGTTGCAGCACAATCAGATGGGGTTGACCCACTGAAGGTGGAAGTCAGATTGTTTGACAAACTGTTCCTTAAAGAGAATCCTGGTGAACTTGATGATTGGCTTGCTCATTTAAATCCAAATTCTAAAATAGTGGTCCCCGCTGCATATGCTGTATCATCCCTTCAGAATGCTGCAGTTGGAGACAGATTTCAGTTTGAAAGGCTTGGCTATTTTGCAGTTGATAAGGATTCCACACCCGAAAAGCTTGTTTTCAATCGGATCGTGACATTGAGAGAGAGTTACGTCAAGGGGGGAAGTAGCCGTGGAATTAGGATGAATCCATTCATATTACAGTGGATTACTGGAGGCGTTGAGTAG

Network for GWHGAAZE022623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04557.16	tRNA_synt_1c_R2	22	95	2.80E-08
PF00749.22	tRNA-synt_1c	120	273	7.30E-59
PF00749.22	tRNA-synt_1c	284	383	2.10E-24
PF03950.19	tRNA-synt_1c_C	386	577	2.60E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01886	QARS, glnS	Metabolic pathways	map01100
K01886	QARS, glnS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0043039	biological_process	tRNA aminoacylation
GO:0006425	biological_process	glutaminyl-tRNA aminoacylation
GO:0006412	biological_process	translation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004819	molecular_function	glutamine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.430
	SRR3591706	second leaf	49.637
	SRR3591707	mature leaf	43.489
	SRR3591708	Shoot apex	66.541
	SRR3591709	Stem	62.988
	SRR3591710	White floral bud	57.148
	SRR3591711	White flower	74.509
	SRR3591712	Green floral bud	59.593
	SRR3591713	Yellow flower	69.881
SRP173429	SRR8316895	Juvenile bud stage	39.408
	SRR8316896	Juvenile bud stage	63.757
	SRR8316897	Juvenile bud stage	36.684
	SRR8316894	Third green stage	25.511
	SRR8316900	Third green stage	70.362
	SRR8316901	Third green stage	71.887
	SRR8316898	Complete white stage	21.344
	SRR8316899	Complete white stage	85.190
	SRR8316903	Complete white stage	42.562
	SRR8316902	Silver flowering stage	24.433
	SRR8316904	Silver flowering stage	35.488
	SRR8316905	Silver flowering stage	14.351
	SRR8316906	Gold flowering stage	54.633
	SRR8316907	Gold flowering stage	50.056
	SRR8316908	Gold flowering stage	53.643
SRP132670	SRR6706286	Control	30.393
	SRR6706287	Light intensity 50%	37.386
	SRR6706288	Light intensity 20%	40.674
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.992
	CNS0095593	Slightly white alabastrum(diploid) 2	90.865
	CNS0095594	Slightly white alabastrum(diploid) 3	63.049
	CNS0095595	Whole white alabastrum(diploid) 2	59.989
	CNS0095596	Whole white alabastrum(diploid) 3	45.675
	CNS0095597	Whole white alabastrum(diploid) 4	47.713
	CNS0095598	Silvery flower (diploied) 1	50.053
	CNS0095599	Silvery flower (diploied) 2	49.806
	CNS0095600	Silvery flower (diploied) 3	47.633
	CNS0095601	Golden flower (diploid) 1	45.095
	CNS0095602	Golden flower (diploid) 2	49.465
	CNS0095603	Golden flower (diploid) 3	46.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.544
	CNS0095606	Slightly white alabastrum(tetraploid) 3	111.011
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.004
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.240
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.764
	CNS0095610	Silvery flower (tetraploid) 1	68.673
	CNS0095611	Silvery flower (tetraploid) 2	57.743
	CNS0095612	Silvery flower (tetraploid) 3	62.940
	CNS0095613	Golden flower (tetraploid) 1	40.274
	CNS0095614	Golden flower (tetraploid) 2	53.202
	CNS0095615	Golden flower (tetraploid) 3	35.508
CRA001975	CRR073297	Stem 1	41.397
	CRR073298	Stem 2	38.516
	CRR073299	Stem 3	26.937
	CRR073300	Leaf 1	51.916
	CRR073301	Leaf 2	48.672
	CRR073302	Leaf 3	28.281
	CRR073303	Juvenile bud 1	35.194
	CRR073304	Juvenile bud 2	24.422
	CRR073305	Juvenile bud 3	43.396
	CRR073306	Third green 1	10.092
	CRR073307	Third green 2	10.051
	CRR073308	Third green 3	12.122
	CRR073309	Second white 1	12.941
	CRR073310	Second white 2	22.651
	CRR073311	Second white 3	21.646
	CRR073312	Silver flowering 1	14.863
	CRR073313	Silver flowering 2	14.825
	CRR073314	Silver flowering 3	12.579
	CRR073315	Gold flowering 1	20.175
	CRR073316	Gold flowering 2	34.573
	CRR073317	Gold flowering 3	15.099
	CRR073318	Tawny withering 1	30.898
	CRR073319	Tawny withering 2	37.638
	CRR073320	Tawny withering 3	32.565