Gene detail

Detail information of GWHGAAZE022624

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006448450.1	6.5464E-105	hypothetical protein CICLE_v10015986mg [Citrus clementina]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	4E-61	Transcription factor MYB108
trEMBL	tr\|V4UC33\|V4UC33_9ROSI	2E-105	Uncharacterized protein {ECO:0000313\|EMBL:ESR61690.1}
TAIR10	AT1G25340.1	2E-64	myb domain protein 116

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75595357	75596434	-
GWHAAZE00000006	mRNA	75595357	75596434	-
GWHAAZE00000006	exon	75595357	75595948	-
GWHAAZE00000006	exon	75596062	75596191	-
GWHAAZE00000006	exon	75596281	75596434	-
GWHAAZE00000006	CDS	75596281	75596434	-
GWHAAZE00000006	CDS	75596062	75596191	-
GWHAAZE00000006	CDS	75595357	75595948	-

Transcript Sequence
>GWHTAAZE022654 ATGGGCACTAAGAGGGTGTTGAATTCTAAGGAAGAAAAAGAACAACTTGAGGAGCTAAGAAGAGGGCCATGGACTCAAGAGGAAGACACCCTTCTTTCCAACTACATCACTTTTCACGGAGAAGGCCGTTGGAATTTGCTAGCTAAATCTTCAGGTTTAAAGAGAACCGGAAAAAGCTGTAGATTGAGATGGCTGAATTATTTAAAACCGGACATTAAACGTGGAAACCTTACACCGAAAGAACAAATCTTAATTCTTGAACTCCATTCCAAGTGGGGCAATAGGTGGTCCAAAATTGCACAACATTTACCCGGAAGAACAGATAATGAAATTAAGAACTATTGGCGGACCAGGGTGCAAAAGCAAGCACGTCAACTTAAGATTGATTCTAACAGCAAAAAGTTCCTTGAAGCACTTCGACGTTTTTGGATGCCAAGATTGCGTGAAAAAATTGAGCAAAATTCTCCATCACCATCGTTATCGTCTACTTCAACCATGGAAACTCAAGATTCTTTTACTTTTTCTCCACCGGCCGAACAGGCCCCTATGGCTTTATCACCTCCACAACCAATCAAAGTGAACAACTTCAATCTTCCCAATGAAAATCCCAGCTCTAGCATTTGTTCATCGGATTCCATGAGTATGCCTCAGTTGTTTGAGAATTTAGAACGGCCAAACACTGCCTTCAACAATTCACCCCAAAATGGCTGTTACTATGTGGACATTAGTAGCTTTGACATGGAGGGTTTCAACCAGGCTGACATGTCGGACGAGATTTCGGCTTCAGATTGCCAAATGGCAGAGATTGATTGGATGAATGGCGACGCAGATGGTACTTTTTGGGACCTTGATGAGTTGTGGCAGATTAGGAACTAG

Network for GWHGAAZE022624

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	21	68	4.10E-14
PF00249.32	Myb_DNA-binding	74	117	2.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.094
	SRR3591706	second leaf	1.311
	SRR3591707	mature leaf	4.470
	SRR3591708	Shoot apex	0.683
	SRR3591709	Stem	2.660
	SRR3591710	White floral bud	32.712
	SRR3591711	White flower	20.183
	SRR3591712	Green floral bud	37.452
	SRR3591713	Yellow flower	9.540
SRP173429	SRR8316895	Juvenile bud stage	0.852
	SRR8316896	Juvenile bud stage	2.651
	SRR8316897	Juvenile bud stage	0.565
	SRR8316894	Third green stage	3.985
	SRR8316900	Third green stage	17.228
	SRR8316901	Third green stage	15.952
	SRR8316898	Complete white stage	11.823
	SRR8316899	Complete white stage	32.574
	SRR8316903	Complete white stage	21.166
	SRR8316902	Silver flowering stage	2.786
	SRR8316904	Silver flowering stage	5.024
	SRR8316905	Silver flowering stage	2.224
	SRR8316906	Gold flowering stage	5.922
	SRR8316907	Gold flowering stage	2.750
	SRR8316908	Gold flowering stage	2.463
SRP132670	SRR6706286	Control	17.969
	SRR6706287	Light intensity 50%	17.423
	SRR6706288	Light intensity 20%	20.622
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.010
	CNS0095593	Slightly white alabastrum(diploid) 2	4.335
	CNS0095594	Slightly white alabastrum(diploid) 3	4.341
	CNS0095595	Whole white alabastrum(diploid) 2	9.323
	CNS0095596	Whole white alabastrum(diploid) 3	8.610
	CNS0095597	Whole white alabastrum(diploid) 4	9.936
	CNS0095598	Silvery flower (diploied) 1	7.865
	CNS0095599	Silvery flower (diploied) 2	14.319
	CNS0095600	Silvery flower (diploied) 3	46.571
	CNS0095601	Golden flower (diploid) 1	9.739
	CNS0095602	Golden flower (diploid) 2	14.944
	CNS0095603	Golden flower (diploid) 3	17.391
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.193
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.724
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.088
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.016
	CNS0095610	Silvery flower (tetraploid) 1	34.582
	CNS0095611	Silvery flower (tetraploid) 2	47.431
	CNS0095612	Silvery flower (tetraploid) 3	6.622
	CNS0095613	Golden flower (tetraploid) 1	10.175
	CNS0095614	Golden flower (tetraploid) 2	12.599
	CNS0095615	Golden flower (tetraploid) 3	14.035
CRA001975	CRR073297	Stem 1	8.744
	CRR073298	Stem 2	11.812
	CRR073299	Stem 3	7.039
	CRR073300	Leaf 1	34.390
	CRR073301	Leaf 2	24.762
	CRR073302	Leaf 3	26.582
	CRR073303	Juvenile bud 1	40.496
	CRR073304	Juvenile bud 2	34.464
	CRR073305	Juvenile bud 3	36.291
	CRR073306	Third green 1	0.291
	CRR073307	Third green 2	0.238
	CRR073308	Third green 3	0.430
	CRR073309	Second white 1	0.455
	CRR073310	Second white 2	0.236
	CRR073311	Second white 3	0.483
	CRR073312	Silver flowering 1	0.049
	CRR073313	Silver flowering 2	0.409
	CRR073314	Silver flowering 3	0.116
	CRR073315	Gold flowering 1	1.965
	CRR073316	Gold flowering 2	1.965
	CRR073317	Gold flowering 3	0.956
	CRR073318	Tawny withering 1	1.602
	CRR073319	Tawny withering 2	3.660
	CRR073320	Tawny withering 3	1.055