Gene detail

Detail information of GWHGAAZE022637

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACZ51240.1	0	3-ketoacyl-CoA synthase [Arachis hypogaea]
COG	YP_001103493.1	1E-18	type III polyketide synthase
Swissprot	tr\|Q9XF43\|KCS6_ARATH	0	3-ketoacyl-CoA synthase 6
trEMBL	tr\|I1E3D2\|I1E3D2_ARAHY	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G68530.1	0	3-ketoacyl-CoA synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75922175	75923422	+
GWHAAZE00000006	mRNA	75922175	75923422	+
GWHAAZE00000006	exon	75922175	75922973	+
GWHAAZE00000006	exon	75923067	75923422	+
GWHAAZE00000006	CDS	75922175	75922973	+
GWHAAZE00000006	CDS	75923067	75923422	+

Transcript Sequence
>GWHTAAZE022667 ATGAAAAAGCCTCGCTCCATTTATCTAGTTGACCATGCGTGTTTCAAGCCCCCCTCTTCCCTCAGAGTCCCTTACTCAACCTTAATAGAACATGCAAAAATCGTCCTAGTCTCACAGCCCAAAAGCCTCCACTTCCAAATGAAAATCCTTGAGCGATCTGGCCTCGGCGAAGAGACTTGTTTGCCCCCGGCTATACATTTTATACCACCAAAACCAAACATGTTAGCTGCCAGAGAAGAGGCCGAAGCTGTCCTTTTCTCCGCCATGGATTCTTTGCTTGCCAAAACAGGCCTTAAGCCCAAAGATATTGATATACTTATAGTAAACTGCAGCCTCTTCTCTCCCACTCCATCTCTATCGGCTATGGTGATTAATAAGTACAAAATGAGGAGCAACATAAAGAGCTTTAACTTATCGGGCATGGGGTGTAGTGCTGGGCTTATATCAGTCGATTTAGCTCGTGATCTTCTTCAAGTTCATCCAAATTCGAACGCTGTTGTCGTCAGCACTGAGATCATTACTCCAAATATTTACATGGGGAACCAAAGACCAATGCAACTTCCAAACTGTCTCTTTCGAATGGGTGGTGCCGCCATTCTTTTATCCAACCGAAGAGCGGACCGCCACCGAGCTAAGTATCGGCTTGTTCACGTGGTCCGAACCAACAAAGGCTACGACGACAAAGCTTATCGGTGCGTGTTCGAAGAGGAAGACCCGGATGGGATTGTGGGTATATCGTTGTCGATAGACCTAATGGCCATAGCTGGTGAGGCATTGAAGTCGAATATCACCACCATTGCGAACTTCAAACGGGCATTCGAGCATTTCTGCATACATGCGGGAGGGAGGGCCGTGATAGATGAGCTGCAGAAGCATTTACAGCTGTTGACAGAAGACGTGGAGGCATCAAGAATGACGTTGCATAGGTTTGGGAACACATCATCATCATCGTTGTGGTATGAGTTGAGTTATATAGAGGCAAAGGGAAGGATGAAGAAGGGTGACAGAGTTTGGCAGATTGGGTTTGGGAGTGGGTTTAAGTGTAACAGTGCTGTTTGGATGTGTAACAGGACTATCGAGGTTCCGGTTGATGGACCATGGGTTGATTGCATTGAGAGGTATCCTGTTCATATTCCGGAAGTGGTCAAGCTCTAA

Network for GWHGAAZE022637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	1	267	1.10E-122
PF08541.11	ACP_syn_III_C	273	353	3.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.795
	SRR3591706	second leaf	179.922
	SRR3591707	mature leaf	72.848
	SRR3591708	Shoot apex	143.293
	SRR3591709	Stem	23.569
	SRR3591710	White floral bud	37.540
	SRR3591711	White flower	34.829
	SRR3591712	Green floral bud	82.202
	SRR3591713	Yellow flower	1.575
SRP173429	SRR8316895	Juvenile bud stage	154.470
	SRR8316896	Juvenile bud stage	199.138
	SRR8316897	Juvenile bud stage	104.529
	SRR8316894	Third green stage	53.971
	SRR8316900	Third green stage	68.151
	SRR8316901	Third green stage	87.377
	SRR8316898	Complete white stage	7.466
	SRR8316899	Complete white stage	129.888
	SRR8316903	Complete white stage	18.108
	SRR8316902	Silver flowering stage	2.139
	SRR8316904	Silver flowering stage	3.491
	SRR8316905	Silver flowering stage	0.861
	SRR8316906	Gold flowering stage	3.545
	SRR8316907	Gold flowering stage	0.959
	SRR8316908	Gold flowering stage	1.643
SRP132670	SRR6706286	Control	61.355
	SRR6706287	Light intensity 50%	51.081
	SRR6706288	Light intensity 20%	42.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.156
	CNS0095593	Slightly white alabastrum(diploid) 2	57.497
	CNS0095594	Slightly white alabastrum(diploid) 3	78.306
	CNS0095595	Whole white alabastrum(diploid) 2	51.496
	CNS0095596	Whole white alabastrum(diploid) 3	6.415
	CNS0095597	Whole white alabastrum(diploid) 4	33.250
	CNS0095598	Silvery flower (diploied) 1	123.052
	CNS0095599	Silvery flower (diploied) 2	76.174
	CNS0095600	Silvery flower (diploied) 3	33.324
	CNS0095601	Golden flower (diploid) 1	65.070
	CNS0095602	Golden flower (diploid) 2	56.888
	CNS0095603	Golden flower (diploid) 3	56.857
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.999
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.004
	CNS0095606	Slightly white alabastrum(tetraploid) 3	259.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.281
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.195
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.707
	CNS0095610	Silvery flower (tetraploid) 1	1.538
	CNS0095611	Silvery flower (tetraploid) 2	11.240
	CNS0095612	Silvery flower (tetraploid) 3	5.990
	CNS0095613	Golden flower (tetraploid) 1	0.642
	CNS0095614	Golden flower (tetraploid) 2	2.086
	CNS0095615	Golden flower (tetraploid) 3	0.245
CRA001975	CRR073297	Stem 1	172.776
	CRR073298	Stem 2	160.818
	CRR073299	Stem 3	173.526
	CRR073300	Leaf 1	140.608
	CRR073301	Leaf 2	156.856
	CRR073302	Leaf 3	119.187
	CRR073303	Juvenile bud 1	59.379
	CRR073304	Juvenile bud 2	16.340
	CRR073305	Juvenile bud 3	98.251
	CRR073306	Third green 1	0.717
	CRR073307	Third green 2	0.012
	CRR073308	Third green 3	3.247
	CRR073309	Second white 1	0.428
	CRR073310	Second white 2	0.130
	CRR073311	Second white 3	0.238
	CRR073312	Silver flowering 1	0.155
	CRR073313	Silver flowering 2	0.262
	CRR073314	Silver flowering 3	0.633
	CRR073315	Gold flowering 1	515.145
	CRR073316	Gold flowering 2	405.126
	CRR073317	Gold flowering 3	657.993
	CRR073318	Tawny withering 1	5.641
	CRR073319	Tawny withering 2	6.273
	CRR073320	Tawny withering 3	2.802