Gene detail

Detail information of GWHGAAZE022640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279257.1	4.43231E-52	PREDICTED: ethylene-responsive transcription factor ERF118 [Vitis vinifera]
Swissprot	tr\|Q9CA27\|EF118_ARATH	2E-27	Ethylene-responsive transcription factor ERF118
trEMBL	tr\|F6HEX1\|F6HEX1_VITVI	2E-52	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50916.1}
TAIR10	AT1G68550.2	9E-17	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75948651	75950539	-
GWHAAZE00000006	mRNA	75948651	75950539	-
GWHAAZE00000006	exon	75950461	75950539	-
GWHAAZE00000006	exon	75949888	75950096	-
GWHAAZE00000006	exon	75949725	75949753	-
GWHAAZE00000006	exon	75948651	75949339	-
GWHAAZE00000006	five_prime_UTR	75950461	75950539	-
GWHAAZE00000006	five_prime_UTR	75950046	75950096	-
GWHAAZE00000006	CDS	75949888	75950045	-
GWHAAZE00000006	CDS	75949725	75949753	-
GWHAAZE00000006	CDS	75948651	75949339	-

Transcript Sequence
>GWHTAAZE022670 AAGTCTAGTCTAGAGAGAGAAAGAAAAACACAGAAAGGTCGGTTTACAGTGGTGGGTGAAGAGAGAGACAACGAACGAGGGCTTAAGAAGAATAGCGAAGAGGGTTTTAGGGTTTGGGAGTGGAAGATTTATGTCGGCAGGATCTGAATTGGTTCTGATTGGGGCTCCGTTGAAGCTCTGCATATCTTTTGTTGCTTCTTCTGTGTTATTTTCTCTGCTCTGCTGTCTTCATCAGCAGACCCTCGTACTCTGTTCTCCCTCTGTTTCGATGCCTTTGAGGCCAAAAAGGACTTGTTCTGGAGTAGAGAGTTTTGGGGTCAAAGCGCCAGAACAATCTTCCTCTTCGTGCCAACAAAGCAGCAATGGTGAGAAAAACCCTAAGAAGAAGGTTTTAACTGTAGAAATCCCAAATCGCCGGCGATCAACTACAAATCTCAGAGGCGTGCGGCAGAGGAAATGGGGCAAATGGGCAGCCGAAATCAGGGACCCGTTTCAAAGGAAGAGGATTTGGTTAGGTACTTATAGCACCCCTGAAGAAGCATCAATGGCTTATGATGCAAAGAGGCTGGAGTTTGAAGCAATGGAAAAGAGTTACAACAACTCTTCTTCTCAACCTCACTCTGTTACTGAGGACTCTGAGAGTGTGTTCTCGCATACATCTCCTTTCTCGGTTCTTGAACTGGAGTCATCTTCGCTTTCTCCTGTTAATGGGAAACGAACTGAAAATATTAATGGTAATACAGTTGCAGTTTCAAAGGAGGATGAGCAATTATCGTTGGCTCAAATTGGGGAAAAGCTGGAGTTGGATTTGGAGCTTGATTCATTGTTTATGGATGATTTTGTGAAGCCTCTTGATGATTTTGGGGATCTTGATGATCTTAAAATCTGCTGTGGGTATTCAAATGAGGGGGCTAGTGATTTGCCTGATTGGGATTTTGGAGAATTTGGGAGTGAAGAGATTGCTTGGTTAAATCAATTGAGGATGGATGAGTTCGCTCAATGTTGA

Network for GWHGAAZE022640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	102	150	2.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.854
	SRR3591706	second leaf	10.197
	SRR3591707	mature leaf	17.345
	SRR3591708	Shoot apex	34.462
	SRR3591709	Stem	39.729
	SRR3591710	White floral bud	23.875
	SRR3591711	White flower	29.898
	SRR3591712	Green floral bud	24.849
	SRR3591713	Yellow flower	31.696
SRP173429	SRR8316895	Juvenile bud stage	17.925
	SRR8316896	Juvenile bud stage	21.297
	SRR8316897	Juvenile bud stage	10.199
	SRR8316894	Third green stage	11.035
	SRR8316900	Third green stage	30.502
	SRR8316901	Third green stage	35.350
	SRR8316898	Complete white stage	4.497
	SRR8316899	Complete white stage	34.789
	SRR8316903	Complete white stage	9.619
	SRR8316902	Silver flowering stage	7.652
	SRR8316904	Silver flowering stage	9.340
	SRR8316905	Silver flowering stage	3.311
	SRR8316906	Gold flowering stage	13.824
	SRR8316907	Gold flowering stage	19.055
	SRR8316908	Gold flowering stage	21.598
SRP132670	SRR6706286	Control	15.820
	SRR6706287	Light intensity 50%	17.175
	SRR6706288	Light intensity 20%	17.430
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.156
	CNS0095593	Slightly white alabastrum(diploid) 2	27.512
	CNS0095594	Slightly white alabastrum(diploid) 3	25.239
	CNS0095595	Whole white alabastrum(diploid) 2	22.925
	CNS0095596	Whole white alabastrum(diploid) 3	17.502
	CNS0095597	Whole white alabastrum(diploid) 4	15.579
	CNS0095598	Silvery flower (diploied) 1	31.853
	CNS0095599	Silvery flower (diploied) 2	26.056
	CNS0095600	Silvery flower (diploied) 3	22.498
	CNS0095601	Golden flower (diploid) 1	28.341
	CNS0095602	Golden flower (diploid) 2	30.588
	CNS0095603	Golden flower (diploid) 3	30.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.964
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.211
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.351
	CNS0095610	Silvery flower (tetraploid) 1	20.634
	CNS0095611	Silvery flower (tetraploid) 2	14.877
	CNS0095612	Silvery flower (tetraploid) 3	6.005
	CNS0095613	Golden flower (tetraploid) 1	16.868
	CNS0095614	Golden flower (tetraploid) 2	24.981
	CNS0095615	Golden flower (tetraploid) 3	18.141
CRA001975	CRR073297	Stem 1	25.099
	CRR073298	Stem 2	22.536
	CRR073299	Stem 3	16.568
	CRR073300	Leaf 1	19.408
	CRR073301	Leaf 2	17.692
	CRR073302	Leaf 3	13.707
	CRR073303	Juvenile bud 1	10.947
	CRR073304	Juvenile bud 2	5.017
	CRR073305	Juvenile bud 3	13.986
	CRR073306	Third green 1	0.970
	CRR073307	Third green 2	1.071
	CRR073308	Third green 3	1.440
	CRR073309	Second white 1	1.219
	CRR073310	Second white 2	0.872
	CRR073311	Second white 3	0.647
	CRR073312	Silver flowering 1	2.467
	CRR073313	Silver flowering 2	0.921
	CRR073314	Silver flowering 3	1.822
	CRR073315	Gold flowering 1	11.907
	CRR073316	Gold flowering 2	14.788
	CRR073317	Gold flowering 3	7.350
	CRR073318	Tawny withering 1	23.721
	CRR073319	Tawny withering 2	30.332
	CRR073320	Tawny withering 3	25.703