Gene detail

Detail information of GWHGAAZE022650

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN68344.1	2.5136E-129	hypothetical protein VITISV_004018 [Vitis vinifera]
trEMBL	tr\|A5BV84\|A5BV84_VITVI	9E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68344.1}
TAIR10	AT1G13340.1	1E-66	Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76162790	76164944	+
GWHAAZE00000006	mRNA	76162790	76164944	+
GWHAAZE00000006	exon	76162790	76162975	+
GWHAAZE00000006	exon	76163106	76163209	+
GWHAAZE00000006	exon	76163324	76163495	+
GWHAAZE00000006	exon	76163612	76163734	+
GWHAAZE00000006	exon	76164246	76164944	+
GWHAAZE00000006	CDS	76162790	76162975	+
GWHAAZE00000006	CDS	76163106	76163209	+
GWHAAZE00000006	CDS	76163324	76163495	+
GWHAAZE00000006	CDS	76163612	76163734	+
GWHAAZE00000006	CDS	76164246	76164944	+

Transcript Sequence
>GWHTAAZE022680 ATGGGGAATAAACTGGATTCTCTGCTGGGAAGGAACCTGAAGCTCTCCAAATTCAAATCCACCATTAACCTGGCCACCTCTCGTCTGACCATCCTCAAGAACCAGCGCCAGTCTCGCCTATCCATCGCCTGCTCCGATGTTGTTCAACTCCTCAACCTCGGTCACCACGAACGTGCCCTCCTTCGTGTTGAGCAAGTTATCAAGGAGCAGAACATGTTGGATGCGTTTGCTATTATACAAGGCTATTGTGATCTCTTGATCGAGAGGGCTAACCTTTTAGAACACGCAAAAGTATGTCCTGATGAACTTAAAGAGGCCATCTCCAGCTTGCTCTTCGCGTCCACGAGATGTGGGGAATTCCCAGAGCTTCAAGTGATTCGCTCAATTTTCACTTCTCGATTCGGGAAGGAATTTGCTGGCCGTTCTATTGAACTACGCAACAATTGTGGGGTCAATCCTAGGATAATACAAAAGCTGTCAACAAAGCAACCAAGCTTGGAGATCAGATTGAAAGCACTCGAGGAAATCGCTTCAGAGAATCAAATTGCTCTCCAAATCGAGGGCGTGTCTTCAATTACCGCAGAGGAGAAAATTGACATGGATATAAAGCAGAATCAGCCTAGGCCAGATGCGCCAATGAATCCAGAAGGGGCTGAGATTAGAGACAATTTGCAAATTCTTTCTGACGATATGGAAAAAGTAGAGGATTTTGCTGATTCGATGACGGGGAGGAGAAAGTACAAGGATGCAGCAGACGCTGCACAAGCAGCTTTTGAATCTGCTGCTTATGCAGCAGCAGCCGCAAGAGCAGCTGTGGAACTTTCGCGCTCTGATCCTGATGATCAGAATAGCCCCAATTCTCGACCAAGAAAAGATAATTCTGCCCGTATAAGTGGATTGGGATCCAATGAGAAAATACATCCGATTCAAAATTCTGAATCTGAAGACGAGGAAATATATGTTGAAAACAAGAATGCAGGCGAATTCAAAAGATCAATGTCTTATTCAAGTTCAGATTCTGTTGATAACATGTTGAAAGAGACTGGATTTAATTCACTCGTGGAAGATCAGAGTAAGGCATTGGGGAAGGAGATTGTTATTGATGAAAGTGATGATGAGGGTGGAATTGAACAAGGGCGGAGGAGCCCAGTTACAAACAAGGGTGTTGGGTTTGATAACGATAAGTCGCATTTTGCAGGAGGATCAAGAATGGAAGATGGGCCGCGTCTTAACTTGGAAAATAGGCCTATATCTGCGAGGACCAGAAGAGCGTCTAGCAGATGA

Network for GWHGAAZE022650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0241

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03398.15	Ist1	19	182	2.60E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19476	IST1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.966
	SRR3591706	second leaf	1.503
	SRR3591707	mature leaf	1.203
	SRR3591708	Shoot apex	1.009
	SRR3591709	Stem	14.496
	SRR3591710	White floral bud	4.150
	SRR3591711	White flower	9.731
	SRR3591712	Green floral bud	1.991
	SRR3591713	Yellow flower	9.814
SRP173429	SRR8316895	Juvenile bud stage	6.747
	SRR8316896	Juvenile bud stage	9.589
	SRR8316897	Juvenile bud stage	5.715
	SRR8316894	Third green stage	1.322
	SRR8316900	Third green stage	2.358
	SRR8316901	Third green stage	3.149
	SRR8316898	Complete white stage	1.289
	SRR8316899	Complete white stage	5.544
	SRR8316903	Complete white stage	1.641
	SRR8316902	Silver flowering stage	1.456
	SRR8316904	Silver flowering stage	1.585
	SRR8316905	Silver flowering stage	0.907
	SRR8316906	Gold flowering stage	6.048
	SRR8316907	Gold flowering stage	4.997
	SRR8316908	Gold flowering stage	4.946
SRP132670	SRR6706286	Control	2.703
	SRR6706287	Light intensity 50%	2.376
	SRR6706288	Light intensity 20%	2.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.126
	CNS0095593	Slightly white alabastrum(diploid) 2	6.893
	CNS0095594	Slightly white alabastrum(diploid) 3	7.724
	CNS0095595	Whole white alabastrum(diploid) 2	7.209
	CNS0095596	Whole white alabastrum(diploid) 3	1.772
	CNS0095597	Whole white alabastrum(diploid) 4	4.125
	CNS0095598	Silvery flower (diploied) 1	14.553
	CNS0095599	Silvery flower (diploied) 2	12.591
	CNS0095600	Silvery flower (diploied) 3	7.671
	CNS0095601	Golden flower (diploid) 1	18.222
	CNS0095602	Golden flower (diploid) 2	13.857
	CNS0095603	Golden flower (diploid) 3	15.631
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.390
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.038
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.360
	CNS0095610	Silvery flower (tetraploid) 1	2.756
	CNS0095611	Silvery flower (tetraploid) 2	1.947
	CNS0095612	Silvery flower (tetraploid) 3	1.948
	CNS0095613	Golden flower (tetraploid) 1	4.382
	CNS0095614	Golden flower (tetraploid) 2	4.249
	CNS0095615	Golden flower (tetraploid) 3	5.229
CRA001975	CRR073297	Stem 1	5.361
	CRR073298	Stem 2	4.629
	CRR073299	Stem 3	3.855
	CRR073300	Leaf 1	2.832
	CRR073301	Leaf 2	4.292
	CRR073302	Leaf 3	1.057
	CRR073303	Juvenile bud 1	2.042
	CRR073304	Juvenile bud 2	0.612
	CRR073305	Juvenile bud 3	2.486
	CRR073306	Third green 1	0.653
	CRR073307	Third green 2	1.729
	CRR073308	Third green 3	0.743
	CRR073309	Second white 1	1.050
	CRR073310	Second white 2	3.036
	CRR073311	Second white 3	4.091
	CRR073312	Silver flowering 1	6.794
	CRR073313	Silver flowering 2	5.964
	CRR073314	Silver flowering 3	7.293
	CRR073315	Gold flowering 1	2.441
	CRR073316	Gold flowering 2	2.292
	CRR073317	Gold flowering 3	3.250
	CRR073318	Tawny withering 1	18.149
	CRR073319	Tawny withering 2	22.741
	CRR073320	Tawny withering 3	13.358