Gene detail

Detail information of GWHGAAZE022658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010263421.1	1.8932E-102	PREDICTED: uncharacterized protein LOC104601677 isoform X1 [Nelumbo nucifera]
trEMBL	tr\|A5BV84\|A5BV84_VITVI	2E-101	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68344.1}
TAIR10	AT1G13340.1	9E-58	Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76312001	76313988	+
GWHAAZE00000006	mRNA	76312001	76313988	+
GWHAAZE00000006	exon	76312001	76312141	+
GWHAAZE00000006	exon	76312284	76312384	+
GWHAAZE00000006	exon	76312495	76312666	+
GWHAAZE00000006	exon	76312783	76312905	+
GWHAAZE00000006	exon	76313417	76313988	+
GWHAAZE00000006	CDS	76312001	76312141	+
GWHAAZE00000006	CDS	76312284	76312384	+
GWHAAZE00000006	CDS	76312495	76312666	+
GWHAAZE00000006	CDS	76312783	76312905	+
GWHAAZE00000006	CDS	76313417	76313707	+
GWHAAZE00000006	three_prime_UTR	76313708	76313988	+

Transcript Sequence
>GWHTAAZE022688 TCCAAATTCAAATCCACCATTAACCTGGCCACCTCTCGTCTGACCATCCTCAAGAACCAGCGCCAGTCTCGCCTATCCATCGCCTGCTCCGATGTTGTTCAACTCCTCAACCTCGGTCACCACGAACGTGCCCTCCTTCGTGTTGAGCAAGTTATCAAGGAGCAGAACATGTTGGATGCGTTTGCTATACAAGGCTATTGTGATCTCTTGATCGAGAGGGCTAACCTTTTAGAACACGCAAAAGTATGTCCTGATGAACTTAAAGAGGCCATCTCCAGCTTGCTCTTCGCGTCCACGAGATGTGGGGAATTCCCAGAGCTTCAAGTGATTCGCTCAATTTTCACTTCTCGATTCGGGAAGGAATTTGCTGGCCGTTCTATTGAACTACGCAACAATTGTGGGGTCAATCCTAGGATAATACAAAAGCTGTCAACAAAGCAACCAAGCTTGGAGATCAGATTGAAAGCACTCGAGGAAATCGCTTCAGAGAATCAAATTGCTCTCAAATCGAAATGCGTGTCTTCAATTACCGCAGAGGAGAAAATTGACGTGGATATAAAGCAGAATCAGCCTAGGCCAGATGCGCCAATGAATCCAGAAGGGGCTGAGATTAGAGACAATTTGCAAATTCTTTCTGACGATTTGGAAAAAGTAGAGGATTTTGCTGATTCGATGACGGGGAGGAGAAAGTACAAGGATGCAGCAGACGCTGCACAAGCAGCTTTTGAATCTGCTGCTTATGCAGCAGCAGCCGCAAGAGCAGCTGTGGAACTTTCGCGCTCTGATCCTGATGATCAGAATAGCCCCAATTCTCACCAAAAAAGATAATTCTGCCCAGTATAAGTGGATTGGGATCCAATGAGAAAATACATCCGATTCAAAATTCTGAATCTGAAGACGAGGAAATATATGTTGAAAACAAGAATGCAGGCGAATTCAAAAGATCAATGTCTTATTCAAGTTCAGATTCTGTTGATAACATGTTGAAAGAGACTGGATTTAATTCACTTTCGTGGAAGATCAGAGTAAGGCATTGGGGAAGGAGATTGTTATTGATGAAAGTGATGATGAGGGTGGAATTGAACAAAGCAGGAGGCCCAGTTACAAAC

Network for GWHGAAZE022658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0241

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03398.15	Ist1	4	166	3.20E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19476	IST1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.061
	SRR3591706	second leaf	0.365
	SRR3591707	mature leaf	0.330
	SRR3591708	Shoot apex	0.022
	SRR3591709	Stem	3.944
	SRR3591710	White floral bud	1.603
	SRR3591711	White flower	3.029
	SRR3591712	Green floral bud	0.487
	SRR3591713	Yellow flower	2.456
SRP173429	SRR8316895	Juvenile bud stage	1.513
	SRR8316896	Juvenile bud stage	2.266
	SRR8316897	Juvenile bud stage	0.626
	SRR8316894	Third green stage	0.419
	SRR8316900	Third green stage	0.419
	SRR8316901	Third green stage	0.506
	SRR8316898	Complete white stage	0.333
	SRR8316899	Complete white stage	1.234
	SRR8316903	Complete white stage	0.373
	SRR8316902	Silver flowering stage	0.597
	SRR8316904	Silver flowering stage	0.435
	SRR8316905	Silver flowering stage	0.273
	SRR8316906	Gold flowering stage	1.030
	SRR8316907	Gold flowering stage	0.521
	SRR8316908	Gold flowering stage	0.520
SRP132670	SRR6706286	Control	0.490
	SRR6706287	Light intensity 50%	0.499
	SRR6706288	Light intensity 20%	0.361
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.853
	CNS0095593	Slightly white alabastrum(diploid) 2	1.789
	CNS0095594	Slightly white alabastrum(diploid) 3	0.851
	CNS0095595	Whole white alabastrum(diploid) 2	1.660
	CNS0095596	Whole white alabastrum(diploid) 3	0.431
	CNS0095597	Whole white alabastrum(diploid) 4	1.726
	CNS0095598	Silvery flower (diploied) 1	3.829
	CNS0095599	Silvery flower (diploied) 2	2.701
	CNS0095600	Silvery flower (diploied) 3	1.343
	CNS0095601	Golden flower (diploid) 1	3.781
	CNS0095602	Golden flower (diploid) 2	2.781
	CNS0095603	Golden flower (diploid) 3	2.227
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.412
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.115
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.594
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.135
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.035
	CNS0095610	Silvery flower (tetraploid) 1	0.439
	CNS0095611	Silvery flower (tetraploid) 2	0.103
	CNS0095612	Silvery flower (tetraploid) 3	0.107
	CNS0095613	Golden flower (tetraploid) 1	0.331
	CNS0095614	Golden flower (tetraploid) 2	0.625
	CNS0095615	Golden flower (tetraploid) 3	0.968
CRA001975	CRR073297	Stem 1	1.024
	CRR073298	Stem 2	0.949
	CRR073299	Stem 3	0.954
	CRR073300	Leaf 1	0.639
	CRR073301	Leaf 2	0.871
	CRR073302	Leaf 3	0.470
	CRR073303	Juvenile bud 1	0.295
	CRR073304	Juvenile bud 2	0.171
	CRR073305	Juvenile bud 3	0.405
	CRR073306	Third green 1	0.381
	CRR073307	Third green 2	0.249
	CRR073308	Third green 3	0.502
	CRR073309	Second white 1	0.310
	CRR073310	Second white 2	0.461
	CRR073311	Second white 3	0.431
	CRR073312	Silver flowering 1	1.338
	CRR073313	Silver flowering 2	0.610
	CRR073314	Silver flowering 3	1.487
	CRR073315	Gold flowering 1	0.810
	CRR073316	Gold flowering 2	0.699
	CRR073317	Gold flowering 3	0.744
	CRR073318	Tawny withering 1	2.291
	CRR073319	Tawny withering 2	4.417
	CRR073320	Tawny withering 3	3.193