Gene detail

Detail information of GWHGAAZE022667

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO70086.1	0	hypothetical protein CISIN_1g017786mg [Citrus sinensis]
COG	YP_289029.1	5E-91	methionine aminopeptidase
Swissprot	tr\|Q9FV52\|MAP1B_ARATH	0	Methionine aminopeptidase 1B, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03174} (Precursor)
trEMBL	tr\|A0A067G3N0\|A0A067G3N0_CITSI	0	Methionine aminopeptidase 1 {ECO:0000256\|HAMAP-Rule:MF_03174}
TAIR10	AT1G13270.1	9E-147	methionine aminopeptidase 1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76450698	76455602	-
GWHAAZE00000006	mRNA	76450698	76455602	-
GWHAAZE00000006	exon	76450698	76450843	-
GWHAAZE00000006	exon	76451142	76451189	-
GWHAAZE00000006	exon	76452488	76452585	-
GWHAAZE00000006	exon	76453330	76453409	-
GWHAAZE00000006	exon	76453661	76453732	-
GWHAAZE00000006	exon	76453956	76453997	-
GWHAAZE00000006	exon	76454139	76454300	-
GWHAAZE00000006	exon	76454450	76454687	-
GWHAAZE00000006	exon	76455056	76455143	-
GWHAAZE00000006	exon	76455470	76455602	-
GWHAAZE00000006	CDS	76455470	76455602	-
GWHAAZE00000006	CDS	76455056	76455143	-
GWHAAZE00000006	CDS	76454450	76454687	-
GWHAAZE00000006	CDS	76454139	76454300	-
GWHAAZE00000006	CDS	76453956	76453997	-
GWHAAZE00000006	CDS	76453661	76453732	-
GWHAAZE00000006	CDS	76453330	76453409	-
GWHAAZE00000006	CDS	76452488	76452585	-
GWHAAZE00000006	CDS	76451142	76451189	-
GWHAAZE00000006	CDS	76450698	76450843	-

Transcript Sequence
>GWHTAAZE022697 ATGGCCTCTTCACTGTCTCGAGCAGCTACTCTGCAACTGTCATCTTTTGTCCATGGGGAATCGTCCTTATTATTATTCTCAAATTCATCTTCTAACCTTTTCTTGGGCACCTTCTTACTACCGTCTCCCTCCAGAGGAGGCAATGGTTTACACTCTCCAAACAGACTTCTTGTTGTTTCCAAGAAGCGTTCTGGCTTAGAGGAGGCTATGAGAATTCGAAGGGAACGCGAGCTTAAACCTTCAACAGCACCTAAACGGAGGGCACCCTTGAGGCGTGCAAGGGTATCACAGCGCCTTCCTGTACCAGATCACATACCAAAGCCTCCGTATCTAAGTTCAAATTTGTTGCCAGAAATTTCGACTGAATTTCAAATTCCTGGTGATGAAGGAATTGCTCACATGAGGGCTGCGTGTGAGCTCGCCGCTCGAGTCTTGGATCAGGCAGGGACAATGGTTAGGCCATCAGTGACAACAAATGAAATTGACAAAGCAGTGCATCAAATGATCATTGACGCCGGTGCTTATCCTTCACCTCTTGGCTATGGGGGCTTTCCAAAGAGTGTATGCACATCAGTGAATGAGTGCATGTGCCATGGTATTCCCGATTCTCGCCAGTTACAGGATGGTGACATAATAAACATCGACGTGACAGTCTACTTAAATGGTTATCATGGAGATACATCAAAGACCTTTCTCTGTGGCAACGTTGACCAGGCGACAAAACGGCTTGTGAAGGTGACTGAAGAGTGCTTAGAAAGAGGCATTGCTGCTTGTAAGGATGGTGCTCTTTTTAGGAAAATCGGAAAGAAAATTAGTGAACATGCTGACAAATTTGGATATGGTGTGGTGGAGCGTTTTGTTGGGCATGGAGTGGGGACTGTATTTCATTCTGAACCACTTATCTACCATGTTCGCAATGATGGGCCCGGTTTCATGGTTGAAGGTCAAACATTTACCATTGAACCAATTCTTACATTGGGAAGCACGGATTGCATAACATGGGAAGATAACTGGACAACTCTTACAGCTGATGGTAGCCCAGCTGCGCAGTTTGAGCATACCATTTTGATTACCAAAACCGGTGCAGAAATTTTGACCAAGCACTAA

Network for GWHGAAZE022667

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00557.25	Peptidase_M24	133	359	1.00E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004177	molecular_function	aminopeptidase activity
GO:0008235	molecular_function	metalloexopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.027
	SRR3591706	second leaf	35.987
	SRR3591707	mature leaf	27.193
	SRR3591708	Shoot apex	26.126
	SRR3591709	Stem	8.657
	SRR3591710	White floral bud	8.342
	SRR3591711	White flower	12.372
	SRR3591712	Green floral bud	20.765
	SRR3591713	Yellow flower	8.637
SRP173429	SRR8316895	Juvenile bud stage	14.212
	SRR8316896	Juvenile bud stage	16.538
	SRR8316897	Juvenile bud stage	9.936
	SRR8316894	Third green stage	8.424
	SRR8316900	Third green stage	32.848
	SRR8316901	Third green stage	30.055
	SRR8316898	Complete white stage	5.788
	SRR8316899	Complete white stage	24.733
	SRR8316903	Complete white stage	9.673
	SRR8316902	Silver flowering stage	2.265
	SRR8316904	Silver flowering stage	3.640
	SRR8316905	Silver flowering stage	1.835
	SRR8316906	Gold flowering stage	9.300
	SRR8316907	Gold flowering stage	10.614
	SRR8316908	Gold flowering stage	8.076
SRP132670	SRR6706286	Control	39.041
	SRR6706287	Light intensity 50%	45.161
	SRR6706288	Light intensity 20%	46.756
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.475
	CNS0095593	Slightly white alabastrum(diploid) 2	9.392
	CNS0095594	Slightly white alabastrum(diploid) 3	8.821
	CNS0095595	Whole white alabastrum(diploid) 2	8.281
	CNS0095596	Whole white alabastrum(diploid) 3	12.532
	CNS0095597	Whole white alabastrum(diploid) 4	8.525
	CNS0095598	Silvery flower (diploied) 1	17.802
	CNS0095599	Silvery flower (diploied) 2	11.581
	CNS0095600	Silvery flower (diploied) 3	14.889
	CNS0095601	Golden flower (diploid) 1	9.794
	CNS0095602	Golden flower (diploid) 2	12.382
	CNS0095603	Golden flower (diploid) 3	13.020
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.598
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.031
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.920
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.992
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.207
	CNS0095610	Silvery flower (tetraploid) 1	13.711
	CNS0095611	Silvery flower (tetraploid) 2	20.604
	CNS0095612	Silvery flower (tetraploid) 3	12.751
	CNS0095613	Golden flower (tetraploid) 1	5.965
	CNS0095614	Golden flower (tetraploid) 2	11.219
	CNS0095615	Golden flower (tetraploid) 3	2.384
CRA001975	CRR073297	Stem 1	33.150
	CRR073298	Stem 2	29.795
	CRR073299	Stem 3	36.246
	CRR073300	Leaf 1	29.452
	CRR073301	Leaf 2	26.256
	CRR073302	Leaf 3	33.839
	CRR073303	Juvenile bud 1	32.143
	CRR073304	Juvenile bud 2	27.583
	CRR073305	Juvenile bud 3	24.646
	CRR073306	Third green 1	3.100
	CRR073307	Third green 2	1.521
	CRR073308	Third green 3	1.896
	CRR073309	Second white 1	4.116
	CRR073310	Second white 2	4.263
	CRR073311	Second white 3	1.965
	CRR073312	Silver flowering 1	2.094
	CRR073313	Silver flowering 2	3.480
	CRR073314	Silver flowering 3	1.963
	CRR073315	Gold flowering 1	47.909
	CRR073316	Gold flowering 2	83.818
	CRR073317	Gold flowering 3	40.794
	CRR073318	Tawny withering 1	11.533
	CRR073319	Tawny withering 2	11.209
	CRR073320	Tawny withering 3	11.927