Gene detail

Detail information of GWHGAAZE022668

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007046304.1	0	AP2 domain class transcription factor [Theobroma cacao]
Swissprot	tr\|Q9ZWM9\|RAV1_ARATH	4E-145	AP2/ERF and B3 domain-containing transcription factor RAV1
trEMBL	tr\|A0A061EB30\|A0A061EB30_THECC	0	AP2 domain class transcription factor {ECO:0000313\|EMBL:EOY02136.1}
TAIR10	AT1G13260.1	3E-113	related to ABI3/VP1 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76460603	76461682	-
GWHAAZE00000006	mRNA	76460603	76461682	-
GWHAAZE00000006	exon	76460603	76461682	-
GWHAAZE00000006	CDS	76460603	76461682	-

Transcript Sequence
>GWHTAAZE022698 ATGGACGGAAGTTGCATAGACGAAACCACCACAAGTGACTCAATATCCCTTTCACCGACATCAGCATCACCTCCGCCGGCGACCAAATCACCGTCGCCGGAGAGCCTCTACCGAATGGGAAGCGGCACAAGCATAATACTAGACTCCGAAGGCGGTGTTGAGGCCGAGTCCCGGAAACTGCCGTCGTCCAGATTCAAAGGAGTGGTCCCACAGCCCAACGGCCGATGGGGAGCGCAGATTTACGAGAAGCACCAGCGTGTCTGGCTCGGCACTTTCAACGAGGAGGACGAGGCCGCCAGGGCCTACGACGTCGCCGCCCAGCGCTTCCGTGGCCGCGATGCCGTCACTAATTTCAAGCCGTTGACCTCTGCTAACGACGTCAACGATCTTGAAATGGCCTTTTTAAACTCGCATTCTAAGGCTGAGATCGTCGATATGTTACGGAAACACACTTACAATGATGAGCTGGAACAGAGCAGAAGAACCTTTGTATGCGAGAAAGACGAAAATGGAAACAGAGTATTCAAAGACGGTTTAATTTGTTCGTACGGTTTAGACCGGTCGGTTAAATCGAGCGAACCGCTCTTCGAGAAGACCGTTACTCCTAGCGACGTGGGAAAGCTAAACCGGCTGGTTATACCGAAGCAACACGCGGAGAGGCACTTCCCACTTCAGACCGGGAGTACTTCCAAGGGGGTTTTGTTGAATTTCGAAGATATTGGGGGCAAAGTGTGGCGATTTAGGTATTCTTATTGGAACAGTAGTCAGAGTTATGTTTTGACTAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGGGGTTGAAAGCTGGTGACACTGTTAGTTTTATGAGGTCCACCGGTTCTGATAAGCAGCTTTATATTGATTGGAAGGGGAGACCTGGGTTGGGTATTACAAGTTTGCCAGTTCAAGTTCAGCCGGTTCAGATGTTTAGATTATTTGGAGTGAATATAGTTGGTGGGCATCAGGATGGTGGGTTTAATAATAATGGGAAGAGAATGAGGGAGATGGAGTTATTAGAATTAGATTTTAGTAAGAAACATAGGGTAATTGATGCTTTGTAA

Network for GWHGAAZE022668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	63	111	4.10E-09
PF02362.22	B3	196	296	4.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-RAV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.113
	SRR3591706	second leaf	10.688
	SRR3591707	mature leaf	15.765
	SRR3591708	Shoot apex	60.522
	SRR3591709	Stem	18.502
	SRR3591710	White floral bud	21.823
	SRR3591711	White flower	34.942
	SRR3591712	Green floral bud	4.589
	SRR3591713	Yellow flower	15.035
SRP173429	SRR8316895	Juvenile bud stage	23.898
	SRR8316896	Juvenile bud stage	18.876
	SRR8316897	Juvenile bud stage	15.442
	SRR8316894	Third green stage	7.784
	SRR8316900	Third green stage	5.288
	SRR8316901	Third green stage	11.519
	SRR8316898	Complete white stage	4.822
	SRR8316899	Complete white stage	21.648
	SRR8316903	Complete white stage	10.499
	SRR8316902	Silver flowering stage	10.633
	SRR8316904	Silver flowering stage	12.709
	SRR8316905	Silver flowering stage	5.290
	SRR8316906	Gold flowering stage	15.072
	SRR8316907	Gold flowering stage	21.003
	SRR8316908	Gold flowering stage	32.831
SRP132670	SRR6706286	Control	15.550
	SRR6706287	Light intensity 50%	21.683
	SRR6706288	Light intensity 20%	14.969
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.531
	CNS0095593	Slightly white alabastrum(diploid) 2	26.092
	CNS0095594	Slightly white alabastrum(diploid) 3	31.979
	CNS0095595	Whole white alabastrum(diploid) 2	18.604
	CNS0095596	Whole white alabastrum(diploid) 3	3.734
	CNS0095597	Whole white alabastrum(diploid) 4	19.422
	CNS0095598	Silvery flower (diploied) 1	128.289
	CNS0095599	Silvery flower (diploied) 2	88.990
	CNS0095600	Silvery flower (diploied) 3	44.135
	CNS0095601	Golden flower (diploid) 1	90.890
	CNS0095602	Golden flower (diploid) 2	65.932
	CNS0095603	Golden flower (diploid) 3	70.562
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.224
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.859
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.002
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.327
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.798
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.040
	CNS0095610	Silvery flower (tetraploid) 1	27.026
	CNS0095611	Silvery flower (tetraploid) 2	19.298
	CNS0095612	Silvery flower (tetraploid) 3	11.782
	CNS0095613	Golden flower (tetraploid) 1	16.410
	CNS0095614	Golden flower (tetraploid) 2	16.815
	CNS0095615	Golden flower (tetraploid) 3	30.003
CRA001975	CRR073297	Stem 1	11.337
	CRR073298	Stem 2	14.100
	CRR073299	Stem 3	13.822
	CRR073300	Leaf 1	16.812
	CRR073301	Leaf 2	18.719
	CRR073302	Leaf 3	9.730
	CRR073303	Juvenile bud 1	3.861
	CRR073304	Juvenile bud 2	5.280
	CRR073305	Juvenile bud 3	8.320
	CRR073306	Third green 1	11.954
	CRR073307	Third green 2	17.035
	CRR073308	Third green 3	17.391
	CRR073309	Second white 1	8.609
	CRR073310	Second white 2	6.384
	CRR073311	Second white 3	5.990
	CRR073312	Silver flowering 1	12.447
	CRR073313	Silver flowering 2	9.366
	CRR073314	Silver flowering 3	7.912
	CRR073315	Gold flowering 1	40.246
	CRR073316	Gold flowering 2	57.508
	CRR073317	Gold flowering 3	50.096
	CRR073318	Tawny withering 1	18.670
	CRR073319	Tawny withering 2	25.995
	CRR073320	Tawny withering 3	15.602