Gene detail

Detail information of GWHGAAZE022673

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACI41981.1	4.3102E-145	putative leucoanthocyanidin reductase [Diospyros kaki]
Swissprot	tr\|Q84V83\|LAR_DESUN	4E-130	Leucoanthocyanidin reductase
trEMBL	tr\|E4W4T1\|E4W4T1_DIOKA	2E-145	Putative leucoanthocyanidin reductase {ECO:0000313\|EMBL:ACI41981.1}
TAIR10	AT1G75290.1	9E-55	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76599120	76611281	+
GWHAAZE00000006	mRNA	76599120	76611281	+
GWHAAZE00000006	exon	76599120	76599404	+
GWHAAZE00000006	exon	76599628	76599768	+
GWHAAZE00000006	exon	76601175	76601412	+
GWHAAZE00000006	exon	76604771	76604974	+
GWHAAZE00000006	exon	76611223	76611281	+
GWHAAZE00000006	five_prime_UTR	76599120	76599203	+
GWHAAZE00000006	CDS	76599204	76599404	+
GWHAAZE00000006	CDS	76599628	76599768	+
GWHAAZE00000006	CDS	76601175	76601412	+
GWHAAZE00000006	CDS	76604771	76604974	+
GWHAAZE00000006	CDS	76611223	76611281	+

Transcript Sequence
>GWHTAAZE022703 ACATTTTATTACATAGATCGATCGAGAAAAACTTTAGGCCCAGCTGGATATAAGAAAGAAAGAAAATAGTAGAATTAATTAAATATGACTATGTCACGCGCTGTTACTTCAAGCAAGGGTCGGGTCCTCATAGTCGGAGCGACCGGTTTTATCGGTCAGTTCATCACCCAAGCCTGCCTCGACACTGGCCGGTTCACCTATGTTCTGCTCCGCTCGGTTCCTCGTTGCCCTTCTAAGGCCAAAGCCATTAAAGCTCTTAAGGATAAAGGCGCCACCGTTATCTACGGGGTTATTAACGATCAAGAGTTAATGGAGAAGATATTAAAGGAACAAGAGATAGAGACAGTAATATCAGCAGTTGGTGGTGCAAGTATATTGGACCAACTCACTCTTGTACACGCTATGAAAGCAGTTGGAACCATCAAGAGGTTTTTGCCATCGGAGTTTGGGCATGACGTGGACAGGGCGAACCCAGTGGAGCCAGGGTTATCCATGTACCTAGAGAAGCGTAGGGTCCGGCGAGTTGTGGAGGATTCTGGGGTACCCTACACTTATATATGCTGCAATTCGATTGCTTCTTGGCCCTACTACAATAACACTCATCCTTCTGAAGTTCTCCCTCCCTTGGATCAGTTTCAAATCTACGGCGATGGTACCGTCAAAGCTTATTTTGTGGCCGGCACTGATATCGGAAAATTTACCATGAAAACCGTCGATGACATTCGGACAGTAAAAAAAAATGTTCACTTCCGACCACCCTCTAATTACCTTAACATCAACGAACTTGCATTATTATGGGAGAACAAAATTGGACGAACCCTCCCTAAGATAACTGTCTCTGAGGATGATTTACTAGCTGCTGCTGGAGGGCCCCGTGCGGCCGACCCTGAAGGCCAGCCCATTACGAGCAATATGCCAGAACTGTAA

Network for GWHGAAZE022673

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0011

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05368.14	NmrA	14	245	7.10E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13081	LAR	Biosynthesis of secondary metabolites	map01110
K13081	LAR	Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.090
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.097
	SRR3591709	Stem	41.422
	SRR3591710	White floral bud	2.339
	SRR3591711	White flower	2.218
	SRR3591712	Green floral bud	0.183
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	9.875
	SRR8316896	Juvenile bud stage	8.110
	SRR8316897	Juvenile bud stage	2.099
	SRR8316894	Third green stage	2.477
	SRR8316900	Third green stage	1.230
	SRR8316901	Third green stage	2.183
	SRR8316898	Complete white stage	0.435
	SRR8316899	Complete white stage	7.931
	SRR8316903	Complete white stage	3.654
	SRR8316902	Silver flowering stage	0.081
	SRR8316904	Silver flowering stage	0.207
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.217
	SRR8316908	Gold flowering stage	0.163
SRP132670	SRR6706286	Control	1.272
	SRR6706287	Light intensity 50%	0.945
	SRR6706288	Light intensity 20%	0.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.867
	CNS0095593	Slightly white alabastrum(diploid) 2	3.930
	CNS0095594	Slightly white alabastrum(diploid) 3	22.999
	CNS0095595	Whole white alabastrum(diploid) 2	8.269
	CNS0095596	Whole white alabastrum(diploid) 3	0.334
	CNS0095597	Whole white alabastrum(diploid) 4	2.993
	CNS0095598	Silvery flower (diploied) 1	11.124
	CNS0095599	Silvery flower (diploied) 2	8.004
	CNS0095600	Silvery flower (diploied) 3	3.691
	CNS0095601	Golden flower (diploid) 1	10.535
	CNS0095602	Golden flower (diploid) 2	3.815
	CNS0095603	Golden flower (diploid) 3	3.973
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.324
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.056
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.112
	CNS0095611	Silvery flower (tetraploid) 2	0.181
	CNS0095612	Silvery flower (tetraploid) 3	0.070
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.073
	CRR073298	Stem 2	3.078
	CRR073299	Stem 3	3.224
	CRR073300	Leaf 1	1.239
	CRR073301	Leaf 2	0.221
	CRR073302	Leaf 3	1.243
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.057
	CRR073305	Juvenile bud 3	0.249
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.094
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	5.250
	CRR073319	Tawny withering 2	5.333
	CRR073320	Tawny withering 3	5.413